Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07835

Experiment: m.b. Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_07830 and CA264_07835 are separated by 156 nucleotidesCA264_07835 and CA264_07840 are separated by 206 nucleotides CA264_07830: CA264_07830 - hypothetical protein, at 1,812,732 to 1,813,991 _07830 CA264_07835: CA264_07835 - RNA methyltransferase, at 1,814,148 to 1,815,323 _07835 CA264_07840: CA264_07840 - sodium:proline symporter, at 1,815,530 to 1,817,278 _07840 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1813.148 kb on + strand, within CA264_07830at 1813.149 kb on - strand, within CA264_07830at 1813.149 kb on - strand, within CA264_07830at 1813.149 kb on - strand, within CA264_07830at 1813.157 kb on + strand, within CA264_07830at 1813.157 kb on + strand, within CA264_07830at 1813.158 kb on - strand, within CA264_07830at 1813.162 kb on + strand, within CA264_07830at 1813.163 kb on - strand, within CA264_07830at 1813.163 kb on - strand, within CA264_07830at 1813.177 kb on - strand, within CA264_07830at 1813.210 kb on + strand, within CA264_07830at 1813.210 kb on + strand, within CA264_07830at 1813.326 kb on + strand, within CA264_07830at 1813.369 kb on - strand, within CA264_07830at 1813.374 kb on + strand, within CA264_07830at 1813.428 kb on - strand, within CA264_07830at 1813.434 kb on + strand, within CA264_07830at 1813.435 kb on - strand, within CA264_07830at 1813.435 kb on - strand, within CA264_07830at 1813.564 kb on - strand, within CA264_07830at 1813.572 kb on - strand, within CA264_07830at 1813.623 kb on + strand, within CA264_07830at 1813.624 kb on - strand, within CA264_07830at 1813.697 kb on + strand, within CA264_07830at 1813.697 kb on + strand, within CA264_07830at 1813.697 kb on + strand, within CA264_07830at 1813.697 kb on + strand, within CA264_07830at 1813.737 kb on - strand, within CA264_07830at 1813.737 kb on - strand, within CA264_07830at 1813.772 kb on + strand, within CA264_07830at 1813.872 kb on + strandat 1813.873 kb on - strandat 1813.878 kb on - strandat 1813.953 kb on + strandat 1813.954 kb on - strandat 1813.954 kb on - strandat 1813.954 kb on - strandat 1813.955 kb on + strandat 1813.956 kb on - strandat 1813.964 kb on - strandat 1814.002 kb on + strandat 1814.003 kb on - strandat 1814.003 kb on - strandat 1814.009 kb on - strandat 1814.040 kb on - strandat 1814.076 kb on + strandat 1814.150 kb on - strandat 1814.181 kb on + strandat 1814.189 kb on - strandat 1814.189 kb on - strandat 1814.189 kb on - strandat 1814.222 kb on - strandat 1814.367 kb on + strand, within CA264_07835at 1814.368 kb on - strand, within CA264_07835at 1814.370 kb on - strand, within CA264_07835at 1814.370 kb on - strand, within CA264_07835at 1814.370 kb on - strand, within CA264_07835at 1814.502 kb on + strand, within CA264_07835at 1814.502 kb on + strand, within CA264_07835at 1814.506 kb on + strand, within CA264_07835at 1814.790 kb on + strand, within CA264_07835at 1814.790 kb on + strand, within CA264_07835at 1814.790 kb on + strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.791 kb on - strand, within CA264_07835at 1814.856 kb on - strand, within CA264_07835at 1814.980 kb on + strand, within CA264_07835at 1814.980 kb on + strand, within CA264_07835at 1814.999 kb on + strand, within CA264_07835at 1815.337 kb on + strandat 1815.338 kb on - strandat 1815.448 kb on - strandat 1815.489 kb on + strandat 1815.490 kb on - strandat 1815.490 kb on - strandat 1815.581 kb on - strandat 1815.588 kb on + strandat 1815.598 kb on + strandat 1815.598 kb on + strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.599 kb on - strandat 1815.735 kb on + strand, within CA264_07840at 1815.748 kb on + strand, within CA264_07840at 1815.797 kb on - strand, within CA264_07840at 1815.842 kb on - strand, within CA264_07840at 1815.924 kb on + strand, within CA264_07840at 1815.924 kb on + strand, within CA264_07840at 1815.925 kb on - strand, within CA264_07840at 1815.973 kb on + strand, within CA264_07840at 1815.977 kb on - strand, within CA264_07840at 1815.977 kb on - strand, within CA264_07840at 1816.019 kb on + strand, within CA264_07840at 1816.020 kb on - strand, within CA264_07840at 1816.020 kb on - strand, within CA264_07840at 1816.044 kb on + strand, within CA264_07840at 1816.052 kb on + strand, within CA264_07840at 1816.061 kb on - strand, within CA264_07840at 1816.114 kb on + strand, within CA264_07840at 1816.114 kb on + strand, within CA264_07840at 1816.119 kb on + strand, within CA264_07840at 1816.120 kb on - strand, within CA264_07840at 1816.127 kb on - strand, within CA264_07840at 1816.149 kb on + strand, within CA264_07840at 1816.246 kb on - strand, within CA264_07840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
remove
1,813,148 + CA264_07830 0.33 -1.6
1,813,149 - CA264_07830 0.33 -2.4
1,813,149 - CA264_07830 0.33 -0.8
1,813,149 - CA264_07830 0.33 +0.2
1,813,157 + CA264_07830 0.34 +0.0
1,813,157 + CA264_07830 0.34 -0.2
1,813,158 - CA264_07830 0.34 -0.6
1,813,162 + CA264_07830 0.34 +0.2
1,813,163 - CA264_07830 0.34 -0.6
1,813,163 - CA264_07830 0.34 -0.8
1,813,177 - CA264_07830 0.35 -1.0
1,813,210 + CA264_07830 0.38 -1.4
1,813,210 + CA264_07830 0.38 +1.5
1,813,326 + CA264_07830 0.47 -0.1
1,813,369 - CA264_07830 0.51 -0.2
1,813,374 + CA264_07830 0.51 -0.2
1,813,428 - CA264_07830 0.55 -0.3
1,813,434 + CA264_07830 0.56 +0.1
1,813,435 - CA264_07830 0.56 -0.0
1,813,435 - CA264_07830 0.56 -1.2
1,813,564 - CA264_07830 0.66 -0.7
1,813,572 - CA264_07830 0.67 -1.6
1,813,623 + CA264_07830 0.71 -0.4
1,813,624 - CA264_07830 0.71 +1.8
1,813,697 + CA264_07830 0.77 -0.8
1,813,697 + CA264_07830 0.77 -0.3
1,813,697 + CA264_07830 0.77 +0.8
1,813,697 + CA264_07830 0.77 -1.6
1,813,737 - CA264_07830 0.80 +1.0
1,813,737 - CA264_07830 0.80 +0.8
1,813,772 + CA264_07830 0.83 +0.1
1,813,872 + -0.7
1,813,873 - -1.1
1,813,878 - +0.3
1,813,953 + +0.3
1,813,954 - -0.6
1,813,954 - +0.2
1,813,954 - -2.2
1,813,955 + -1.6
1,813,956 - -1.0
1,813,964 - +0.0
1,814,002 + -0.2
1,814,003 - -0.7
1,814,003 - -0.3
1,814,009 - -1.1
1,814,040 - -0.2
1,814,076 + +0.8
1,814,150 - -0.2
1,814,181 + +0.2
1,814,189 - +0.2
1,814,189 - +2.1
1,814,189 - -0.1
1,814,222 - -2.1
1,814,367 + CA264_07835 0.19 +0.8
1,814,368 - CA264_07835 0.19 -0.4
1,814,370 - CA264_07835 0.19 -0.2
1,814,370 - CA264_07835 0.19 -0.5
1,814,370 - CA264_07835 0.19 -0.7
1,814,502 + CA264_07835 0.30 -1.6
1,814,502 + CA264_07835 0.30 +0.7
1,814,506 + CA264_07835 0.30 -0.6
1,814,790 + CA264_07835 0.55 -0.8
1,814,790 + CA264_07835 0.55 -0.0
1,814,790 + CA264_07835 0.55 +0.5
1,814,791 - CA264_07835 0.55 -0.3
1,814,791 - CA264_07835 0.55 -1.0
1,814,791 - CA264_07835 0.55 +0.4
1,814,791 - CA264_07835 0.55 -0.3
1,814,856 - CA264_07835 0.60 -0.2
1,814,980 + CA264_07835 0.71 -0.5
1,814,980 + CA264_07835 0.71 -0.3
1,814,999 + CA264_07835 0.72 -0.1
1,815,337 + -1.5
1,815,338 - +0.4
1,815,448 - -0.0
1,815,489 + -0.9
1,815,490 - +0.8
1,815,490 - +0.5
1,815,581 - -2.1
1,815,588 + -1.1
1,815,598 + +0.0
1,815,598 + +0.2
1,815,599 - -0.7
1,815,599 - -1.1
1,815,599 - +0.3
1,815,599 - -0.7
1,815,599 - -0.2
1,815,735 + CA264_07840 0.12 -0.2
1,815,748 + CA264_07840 0.12 -2.1
1,815,797 - CA264_07840 0.15 -0.7
1,815,842 - CA264_07840 0.18 -0.1
1,815,924 + CA264_07840 0.23 -0.5
1,815,924 + CA264_07840 0.23 -1.2
1,815,925 - CA264_07840 0.23 -0.7
1,815,973 + CA264_07840 0.25 -3.6
1,815,977 - CA264_07840 0.26 -0.7
1,815,977 - CA264_07840 0.26 -2.6
1,816,019 + CA264_07840 0.28 +0.3
1,816,020 - CA264_07840 0.28 -0.4
1,816,020 - CA264_07840 0.28 +0.0
1,816,044 + CA264_07840 0.29 +0.2
1,816,052 + CA264_07840 0.30 -1.6
1,816,061 - CA264_07840 0.30 -1.6
1,816,114 + CA264_07840 0.33 -0.8
1,816,114 + CA264_07840 0.33 -1.1
1,816,119 + CA264_07840 0.34 -0.0
1,816,120 - CA264_07840 0.34 -0.2
1,816,127 - CA264_07840 0.34 +0.8
1,816,149 + CA264_07840 0.35 -0.1
1,816,246 - CA264_07840 0.41 -1.6

Or see this region's nucleotide sequence