Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05075

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05065 and CA264_05070 are separated by 34 nucleotidesCA264_05070 and CA264_05075 are separated by 20 nucleotidesCA264_05075 and CA264_05080 are separated by 239 nucleotides CA264_05065: CA264_05065 - anthranilate phosphoribosyltransferase, at 1,173,255 to 1,174,262 _05065 CA264_05070: CA264_05070 - indole-3-glycerol phosphate synthase, at 1,174,297 to 1,175,115 _05070 CA264_05075: CA264_05075 - hypothetical protein, at 1,175,136 to 1,175,759 _05075 CA264_05080: CA264_05080 - tryptophan synthase subunit beta, at 1,175,999 to 1,177,189 _05080 Position (kb) 1175 1176Strain fitness (log2 ratio) -2 -1 0 1 2at 1174.176 kb on - strandat 1174.213 kb on - strandat 1174.267 kb on + strandat 1174.330 kb on + strandat 1174.388 kb on + strand, within CA264_05070at 1174.408 kb on - strand, within CA264_05070at 1174.408 kb on - strand, within CA264_05070at 1174.452 kb on + strand, within CA264_05070at 1174.482 kb on + strand, within CA264_05070at 1174.483 kb on - strand, within CA264_05070at 1174.494 kb on + strand, within CA264_05070at 1174.502 kb on - strand, within CA264_05070at 1174.502 kb on - strand, within CA264_05070at 1174.531 kb on + strand, within CA264_05070at 1174.579 kb on + strand, within CA264_05070at 1174.617 kb on + strand, within CA264_05070at 1174.618 kb on - strand, within CA264_05070at 1174.618 kb on - strand, within CA264_05070at 1174.618 kb on - strand, within CA264_05070at 1174.618 kb on - strand, within CA264_05070at 1174.621 kb on + strand, within CA264_05070at 1174.627 kb on + strand, within CA264_05070at 1174.628 kb on - strand, within CA264_05070at 1174.653 kb on + strand, within CA264_05070at 1174.658 kb on + strand, within CA264_05070at 1174.659 kb on - strand, within CA264_05070at 1174.673 kb on + strand, within CA264_05070at 1174.676 kb on + strand, within CA264_05070at 1174.677 kb on - strand, within CA264_05070at 1174.677 kb on - strand, within CA264_05070at 1174.706 kb on + strand, within CA264_05070at 1174.707 kb on - strand, within CA264_05070at 1174.707 kb on - strand, within CA264_05070at 1174.713 kb on - strand, within CA264_05070at 1174.779 kb on - strand, within CA264_05070at 1174.844 kb on + strand, within CA264_05070at 1174.880 kb on + strand, within CA264_05070at 1174.900 kb on + strand, within CA264_05070at 1175.026 kb on - strand, within CA264_05070at 1175.129 kb on + strandat 1175.205 kb on + strand, within CA264_05075at 1175.206 kb on - strand, within CA264_05075at 1175.216 kb on + strand, within CA264_05075at 1175.223 kb on + strand, within CA264_05075at 1175.224 kb on - strand, within CA264_05075at 1175.255 kb on + strand, within CA264_05075at 1175.256 kb on - strand, within CA264_05075at 1175.355 kb on + strand, within CA264_05075at 1175.438 kb on + strand, within CA264_05075at 1175.453 kb on - strand, within CA264_05075at 1175.459 kb on + strand, within CA264_05075at 1175.459 kb on + strand, within CA264_05075at 1175.460 kb on - strand, within CA264_05075at 1175.460 kb on - strand, within CA264_05075at 1175.535 kb on + strand, within CA264_05075at 1175.536 kb on - strand, within CA264_05075at 1175.536 kb on - strandat 1175.536 kb on - strand, within CA264_05075at 1175.569 kb on + strand, within CA264_05075at 1175.569 kb on + strand, within CA264_05075at 1175.598 kb on + strand, within CA264_05075at 1175.598 kb on + strand, within CA264_05075at 1175.599 kb on - strand, within CA264_05075at 1175.716 kb on + strandat 1175.716 kb on + strandat 1175.717 kb on - strandat 1175.717 kb on - strandat 1175.798 kb on - strandat 1175.836 kb on + strandat 1175.837 kb on - strandat 1175.840 kb on + strandat 1175.840 kb on + strandat 1175.890 kb on + strandat 1175.891 kb on - strandat 1175.934 kb on + strandat 1175.951 kb on - strandat 1175.955 kb on + strandat 1175.968 kb on + strandat 1176.005 kb on + strandat 1176.006 kb on - strandat 1176.078 kb on + strandat 1176.098 kb on + strandat 1176.110 kb on - strandat 1176.158 kb on + strand, within CA264_05080at 1176.182 kb on + strand, within CA264_05080at 1176.183 kb on - strand, within CA264_05080at 1176.183 kb on - strand, within CA264_05080at 1176.210 kb on - strand, within CA264_05080at 1176.210 kb on - strand, within CA264_05080at 1176.210 kb on - strand, within CA264_05080at 1176.401 kb on + strand, within CA264_05080at 1176.401 kb on + strand, within CA264_05080at 1176.401 kb on + strand, within CA264_05080at 1176.414 kb on + strand, within CA264_05080at 1176.515 kb on - strand, within CA264_05080at 1176.675 kb on + strand, within CA264_05080at 1176.691 kb on - strand, within CA264_05080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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1,174,176 - -1.5
1,174,213 - -1.0
1,174,267 + +0.0
1,174,330 + -0.6
1,174,388 + CA264_05070 0.11 -0.7
1,174,408 - CA264_05070 0.14 +0.3
1,174,408 - CA264_05070 0.14 +0.4
1,174,452 + CA264_05070 0.19 -1.5
1,174,482 + CA264_05070 0.23 -0.3
1,174,483 - CA264_05070 0.23 +1.9
1,174,494 + CA264_05070 0.24 +0.9
1,174,502 - CA264_05070 0.25 -0.4
1,174,502 - CA264_05070 0.25 -0.9
1,174,531 + CA264_05070 0.29 +0.9
1,174,579 + CA264_05070 0.34 -0.7
1,174,617 + CA264_05070 0.39 +1.4
1,174,618 - CA264_05070 0.39 -1.0
1,174,618 - CA264_05070 0.39 -0.1
1,174,618 - CA264_05070 0.39 +0.1
1,174,618 - CA264_05070 0.39 -0.1
1,174,621 + CA264_05070 0.40 +0.1
1,174,627 + CA264_05070 0.40 -0.7
1,174,628 - CA264_05070 0.40 -1.5
1,174,653 + CA264_05070 0.43 -1.0
1,174,658 + CA264_05070 0.44 -0.6
1,174,659 - CA264_05070 0.44 +0.9
1,174,673 + CA264_05070 0.46 -0.1
1,174,676 + CA264_05070 0.46 -2.0
1,174,677 - CA264_05070 0.46 -0.9
1,174,677 - CA264_05070 0.46 -0.4
1,174,706 + CA264_05070 0.50 +0.1
1,174,707 - CA264_05070 0.50 -1.1
1,174,707 - CA264_05070 0.50 -0.9
1,174,713 - CA264_05070 0.51 +0.9
1,174,779 - CA264_05070 0.59 -1.4
1,174,844 + CA264_05070 0.67 -1.7
1,174,880 + CA264_05070 0.71 -0.9
1,174,900 + CA264_05070 0.74 +0.1
1,175,026 - CA264_05070 0.89 -0.8
1,175,129 + +0.9
1,175,205 + CA264_05075 0.11 +0.2
1,175,206 - CA264_05075 0.11 -0.4
1,175,216 + CA264_05075 0.13 -0.7
1,175,223 + CA264_05075 0.14 +0.9
1,175,224 - CA264_05075 0.14 -0.2
1,175,255 + CA264_05075 0.19 -0.9
1,175,256 - CA264_05075 0.19 -0.3
1,175,355 + CA264_05075 0.35 +0.0
1,175,438 + CA264_05075 0.48 -0.4
1,175,453 - CA264_05075 0.51 -0.1
1,175,459 + CA264_05075 0.52 -0.7
1,175,459 + CA264_05075 0.52 +0.6
1,175,460 - CA264_05075 0.52 -0.1
1,175,460 - CA264_05075 0.52 -0.0
1,175,535 + CA264_05075 0.64 +0.2
1,175,536 - CA264_05075 0.64 -1.1
1,175,536 - -0.7
1,175,536 - CA264_05075 0.64 +0.9
1,175,569 + CA264_05075 0.69 -0.1
1,175,569 + CA264_05075 0.69 -0.9
1,175,598 + CA264_05075 0.74 -2.1
1,175,598 + CA264_05075 0.74 -0.5
1,175,599 - CA264_05075 0.74 -0.3
1,175,716 + +0.3
1,175,716 + -1.2
1,175,717 - -0.7
1,175,717 - -0.2
1,175,798 - -0.6
1,175,836 + -0.3
1,175,837 - -0.4
1,175,840 + -1.9
1,175,840 + -0.6
1,175,890 + +1.2
1,175,891 - +0.1
1,175,934 + -0.6
1,175,951 - -0.7
1,175,955 + -1.5
1,175,968 + -0.7
1,176,005 + -0.3
1,176,006 - -0.1
1,176,078 + +0.2
1,176,098 + -0.4
1,176,110 - -0.3
1,176,158 + CA264_05080 0.13 -0.4
1,176,182 + CA264_05080 0.15 +1.2
1,176,183 - CA264_05080 0.15 -0.1
1,176,183 - CA264_05080 0.15 -1.1
1,176,210 - CA264_05080 0.18 +0.1
1,176,210 - CA264_05080 0.18 +0.9
1,176,210 - CA264_05080 0.18 +0.3
1,176,401 + CA264_05080 0.34 +0.0
1,176,401 + CA264_05080 0.34 -0.9
1,176,401 + CA264_05080 0.34 +1.4
1,176,414 + CA264_05080 0.35 -0.6
1,176,515 - CA264_05080 0.43 -0.1
1,176,675 + CA264_05080 0.57 -0.1
1,176,691 - CA264_05080 0.58 +0.1

Or see this region's nucleotide sequence