Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01800 and CA264_01805 are separated by 38 nucleotides CA264_01805 and CA264_01810 are separated by 86 nucleotides CA264_01810 and CA264_01815 are separated by 16 nucleotides
CA264_01800: CA264_01800 - gluconate kinase, at 423,737 to 425,260
_01800
CA264_01805: CA264_01805 - 6-phosphogluconate dehydrogenase (decarboxylating), at 425,299 to 426,198
_01805
CA264_01810: CA264_01810 - hypothetical protein, at 426,285 to 426,956
_01810
CA264_01815: CA264_01815 - N-acetyltransferase, at 426,973 to 427,254
_01815
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 424.341 kb on + strand, within CA264_01800 at 424.341 kb on + strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.380 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.407 kb on - strand, within CA264_01800 at 424.420 kb on + strand, within CA264_01800 at 424.593 kb on - strand, within CA264_01800 at 424.677 kb on - strand, within CA264_01800 at 424.721 kb on + strand, within CA264_01800 at 424.722 kb on - strand, within CA264_01800 at 424.853 kb on + strand, within CA264_01800 at 424.854 kb on - strand, within CA264_01800 at 424.854 kb on - strand, within CA264_01800 at 425.090 kb on + strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.091 kb on - strand, within CA264_01800 at 425.183 kb on + strand at 425.184 kb on - strand at 425.196 kb on - strand at 425.258 kb on + strand at 425.258 kb on + strand at 425.258 kb on + strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.259 kb on - strand at 425.262 kb on + strand at 425.262 kb on + strand at 425.263 kb on - strand at 425.263 kb on - strand at 425.265 kb on - strand at 425.268 kb on + strand at 425.268 kb on - strand at 425.269 kb on - strand at 425.269 kb on - strand at 425.336 kb on - strand at 425.478 kb on + strand, within CA264_01805 at 425.550 kb on - strand, within CA264_01805 at 425.833 kb on + strand, within CA264_01805 at 425.878 kb on - strand, within CA264_01805 at 426.126 kb on + strand at 426.126 kb on + strand at 426.127 kb on - strand at 426.236 kb on + strand at 426.236 kb on + strand at 426.240 kb on + strand at 426.262 kb on + strand at 426.263 kb on - strand at 426.281 kb on + strand at 426.281 kb on + strand at 426.287 kb on - strand at 426.287 kb on - strand at 426.295 kb on + strand at 426.296 kb on - strand at 426.307 kb on - strand at 426.380 kb on + strand, within CA264_01810 at 426.396 kb on + strand, within CA264_01810 at 426.420 kb on + strand, within CA264_01810 at 426.432 kb on - strand, within CA264_01810 at 426.495 kb on + strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.496 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.599 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.602 kb on - strand, within CA264_01810 at 426.772 kb on - strand, within CA264_01810 at 426.943 kb on - strand at 426.943 kb on - strand at 426.943 kb on - strand at 426.945 kb on - strand at 426.967 kb on - strand at 426.968 kb on + strand at 426.969 kb on - strand at 426.993 kb on - strand at 427.049 kb on + strand, within CA264_01815 at 427.050 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815 at 427.131 kb on - strand, within CA264_01815
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 424,341 + CA264_01800 0.40 +0.5 424,341 + CA264_01800 0.40 +0.7 424,380 - CA264_01800 0.42 +0.7 424,380 - CA264_01800 0.42 +0.1 424,407 - CA264_01800 0.44 +0.8 424,407 - CA264_01800 0.44 +0.7 424,420 + CA264_01800 0.45 +1.1 424,593 - CA264_01800 0.56 +0.7 424,677 - CA264_01800 0.62 -1.8 424,721 + CA264_01800 0.65 +0.8 424,722 - CA264_01800 0.65 -0.6 424,853 + CA264_01800 0.73 +2.6 424,854 - CA264_01800 0.73 +0.2 424,854 - CA264_01800 0.73 -0.2 425,090 + CA264_01800 0.89 +2.4 425,091 - CA264_01800 0.89 -0.6 425,091 - CA264_01800 0.89 +0.4 425,091 - CA264_01800 0.89 +0.7 425,091 - CA264_01800 0.89 +0.3 425,091 - CA264_01800 0.89 -0.1 425,183 + -0.0 425,184 - -0.4 425,196 - -0.1 425,258 + +1.0 425,258 + -0.2 425,258 + -0.3 425,259 - +0.2 425,259 - +0.1 425,259 - +1.0 425,259 - +0.4 425,262 + -0.3 425,262 + +2.9 425,263 - -0.0 425,263 - -0.5 425,265 - +0.8 425,268 + -0.0 425,268 - +0.8 425,269 - +2.4 425,269 - +0.1 425,336 - -0.0 425,478 + CA264_01805 0.20 +0.9 425,550 - CA264_01805 0.28 -0.4 425,833 + CA264_01805 0.59 +0.4 425,878 - CA264_01805 0.64 -0.2 426,126 + -0.3 426,126 + +1.0 426,127 - +0.2 426,236 + -0.2 426,236 + +0.6 426,240 + -0.3 426,262 + +0.8 426,263 - +0.4 426,281 + +0.7 426,281 + -1.0 426,287 - +0.3 426,287 - +0.3 426,295 + +1.2 426,296 - -0.1 426,307 - +0.2 426,380 + CA264_01810 0.14 +1.3 426,396 + CA264_01810 0.17 +2.0 426,420 + CA264_01810 0.20 -0.0 426,432 - CA264_01810 0.22 +1.4 426,495 + CA264_01810 0.31 +0.8 426,496 - CA264_01810 0.31 +0.6 426,496 - CA264_01810 0.31 +0.1 426,599 - CA264_01810 0.47 +0.8 426,599 - CA264_01810 0.47 +3.0 426,602 - CA264_01810 0.47 +0.9 426,602 - CA264_01810 0.47 +1.0 426,772 - CA264_01810 0.72 +2.0 426,943 - +0.4 426,943 - +0.4 426,943 - -1.0 426,945 - -0.5 426,967 - +1.4 426,968 + -0.0 426,969 - -1.3 426,993 - -1.3 427,049 + CA264_01815 0.27 +0.7 427,050 - CA264_01815 0.27 -0.0 427,131 - CA264_01815 0.56 +0.3 427,131 - CA264_01815 0.56 -1.2 427,131 - CA264_01815 0.56 -0.2
Or see this region's nucleotide sequence