Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00780

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00775 and CA264_00780 are separated by 127 nucleotidesCA264_00780 and CA264_00785 are separated by 146 nucleotides CA264_00775: CA264_00775 - hypothetical protein, at 166,465 to 167,307 _00775 CA264_00780: CA264_00780 - glyoxalase, at 167,435 to 167,833 _00780 CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044 _00785 Position (kb) 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 166.467 kb on - strandat 166.467 kb on - strandat 166.578 kb on - strand, within CA264_00775at 166.589 kb on + strand, within CA264_00775at 166.589 kb on + strand, within CA264_00775at 166.589 kb on + strand, within CA264_00775at 166.590 kb on - strand, within CA264_00775at 166.609 kb on - strand, within CA264_00775at 166.609 kb on - strand, within CA264_00775at 166.700 kb on - strand, within CA264_00775at 166.730 kb on + strand, within CA264_00775at 166.802 kb on + strand, within CA264_00775at 166.802 kb on + strand, within CA264_00775at 166.803 kb on - strand, within CA264_00775at 166.804 kb on + strand, within CA264_00775at 166.804 kb on + strand, within CA264_00775at 166.804 kb on + strand, within CA264_00775at 166.804 kb on + strand, within CA264_00775at 166.805 kb on - strand, within CA264_00775at 166.886 kb on + strand, within CA264_00775at 166.887 kb on - strand, within CA264_00775at 166.984 kb on + strand, within CA264_00775at 166.984 kb on + strand, within CA264_00775at 166.988 kb on + strand, within CA264_00775at 166.989 kb on - strand, within CA264_00775at 167.122 kb on + strand, within CA264_00775at 167.122 kb on + strand, within CA264_00775at 167.127 kb on - strand, within CA264_00775at 167.281 kb on + strandat 167.281 kb on + strandat 167.293 kb on + strandat 167.294 kb on - strandat 167.310 kb on - strandat 167.313 kb on + strandat 167.314 kb on - strandat 167.318 kb on + strandat 167.332 kb on + strandat 167.333 kb on - strandat 167.336 kb on - strandat 167.336 kb on - strandat 167.336 kb on - strandat 167.337 kb on + strandat 167.399 kb on - strandat 167.468 kb on + strandat 167.514 kb on + strand, within CA264_00780at 167.521 kb on + strand, within CA264_00780at 167.577 kb on + strand, within CA264_00780at 167.578 kb on - strand, within CA264_00780at 167.667 kb on + strand, within CA264_00780at 167.861 kb on + strandat 167.883 kb on - strandat 167.883 kb on - strandat 167.904 kb on + strandat 167.981 kb on + strandat 168.021 kb on - strandat 168.021 kb on - strandat 168.025 kb on + strandat 168.026 kb on - strandat 168.027 kb on + strandat 168.083 kb on + strandat 168.089 kb on + strand, within CA264_00785at 168.089 kb on + strand, within CA264_00785at 168.168 kb on - strand, within CA264_00785at 168.168 kb on - strand, within CA264_00785at 168.178 kb on + strand, within CA264_00785at 168.224 kb on + strand, within CA264_00785at 168.225 kb on - strand, within CA264_00785at 168.302 kb on + strand, within CA264_00785at 168.345 kb on + strand, within CA264_00785at 168.448 kb on - strand, within CA264_00785at 168.509 kb on + strand, within CA264_00785at 168.535 kb on - strand, within CA264_00785at 168.641 kb on + strand, within CA264_00785at 168.641 kb on + strand, within CA264_00785at 168.656 kb on + strand, within CA264_00785at 168.656 kb on + strand, within CA264_00785at 168.690 kb on - strand, within CA264_00785at 168.734 kb on + strand, within CA264_00785at 168.734 kb on + strand, within CA264_00785at 168.735 kb on - strand, within CA264_00785at 168.743 kb on + strand, within CA264_00785at 168.744 kb on - strand, within CA264_00785at 168.753 kb on + strand, within CA264_00785at 168.800 kb on + strand, within CA264_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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166,467 - +0.2
166,467 - +1.1
166,578 - CA264_00775 0.13 +0.7
166,589 + CA264_00775 0.15 +0.2
166,589 + CA264_00775 0.15 -0.0
166,589 + CA264_00775 0.15 -0.8
166,590 - CA264_00775 0.15 +0.4
166,609 - CA264_00775 0.17 +1.7
166,609 - CA264_00775 0.17 -0.1
166,700 - CA264_00775 0.28 -1.6
166,730 + CA264_00775 0.31 -0.7
166,802 + CA264_00775 0.40 +0.6
166,802 + CA264_00775 0.40 -1.0
166,803 - CA264_00775 0.40 -0.1
166,804 + CA264_00775 0.40 -0.1
166,804 + CA264_00775 0.40 +0.5
166,804 + CA264_00775 0.40 -0.2
166,804 + CA264_00775 0.40 -0.5
166,805 - CA264_00775 0.40 -0.5
166,886 + CA264_00775 0.50 +0.2
166,887 - CA264_00775 0.50 -0.7
166,984 + CA264_00775 0.62 +0.5
166,984 + CA264_00775 0.62 +0.3
166,988 + CA264_00775 0.62 +0.6
166,989 - CA264_00775 0.62 +0.4
167,122 + CA264_00775 0.78 +0.2
167,122 + CA264_00775 0.78 -1.3
167,127 - CA264_00775 0.79 +0.2
167,281 + +2.6
167,281 + -1.6
167,293 + -0.1
167,294 - -0.3
167,310 - -0.9
167,313 + -1.5
167,314 - +1.1
167,318 + +0.0
167,332 + -0.4
167,333 - -0.3
167,336 - -0.1
167,336 - -0.4
167,336 - -0.9
167,337 + -0.9
167,399 - -0.5
167,468 + -1.7
167,514 + CA264_00780 0.20 -1.1
167,521 + CA264_00780 0.22 -1.5
167,577 + CA264_00780 0.36 +0.1
167,578 - CA264_00780 0.36 -0.3
167,667 + CA264_00780 0.58 -0.5
167,861 + -0.6
167,883 - -0.9
167,883 - -0.7
167,904 + -0.9
167,981 + +0.5
168,021 - -0.1
168,021 - -0.7
168,025 + -2.1
168,026 - -0.8
168,027 + -0.4
168,083 + +0.6
168,089 + CA264_00785 0.10 -0.2
168,089 + CA264_00785 0.10 +1.1
168,168 - CA264_00785 0.18 -0.3
168,168 - CA264_00785 0.18 +1.1
168,178 + CA264_00785 0.19 +1.1
168,224 + CA264_00785 0.23 -1.0
168,225 - CA264_00785 0.23 -1.2
168,302 + CA264_00785 0.30 -0.1
168,345 + CA264_00785 0.34 +1.0
168,448 - CA264_00785 0.44 +0.7
168,509 + CA264_00785 0.50 -0.5
168,535 - CA264_00785 0.52 -0.2
168,641 + CA264_00785 0.62 +1.4
168,641 + CA264_00785 0.62 +1.4
168,656 + CA264_00785 0.63 -0.1
168,656 + CA264_00785 0.63 +0.0
168,690 - CA264_00785 0.67 +0.3
168,734 + CA264_00785 0.71 +1.1
168,734 + CA264_00785 0.71 -0.1
168,735 - CA264_00785 0.71 +0.5
168,743 + CA264_00785 0.72 -0.4
168,744 - CA264_00785 0.72 -0.3
168,753 + CA264_00785 0.73 -0.7
168,800 + CA264_00785 0.77 +0.5

Or see this region's nucleotide sequence