Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29390

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29385 and ABID97_RS29390 are separated by 10 nucleotidesABID97_RS29390 and ABID97_RS29395 overlap by 1 nucleotides ABID97_RS29385: ABID97_RS29385 - tripartite tricarboxylate transporter substrate binding protein, at 802,042 to 803,013 _RS29385 ABID97_RS29390: ABID97_RS29390 - amino acid synthesis family protein, at 803,024 to 803,602 _RS29390 ABID97_RS29395: ABID97_RS29395 - zinc-dependent alcohol dehydrogenase family protein, at 803,602 to 804,624 _RS29395 Position (kb) 803 804Strain fitness (log2 ratio) -1 0 1at 802.100 kb on + strandat 802.409 kb on - strand, within ABID97_RS29385at 802.409 kb on - strand, within ABID97_RS29385at 803.258 kb on + strand, within ABID97_RS29390at 803.259 kb on - strand, within ABID97_RS29390at 803.427 kb on - strand, within ABID97_RS29390at 803.427 kb on - strand, within ABID97_RS29390at 803.441 kb on + strand, within ABID97_RS29390at 803.768 kb on - strand, within ABID97_RS29395at 803.768 kb on - strand, within ABID97_RS29395

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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802,100 + -1.0
802,409 - ABID97_RS29385 0.38 -0.3
802,409 - ABID97_RS29385 0.38 -0.3
803,258 + ABID97_RS29390 0.40 +1.6
803,259 - ABID97_RS29390 0.41 +0.4
803,427 - ABID97_RS29390 0.70 +0.0
803,427 - ABID97_RS29390 0.70 +0.6
803,441 + ABID97_RS29390 0.72 -0.0
803,768 - ABID97_RS29395 0.16 -0.7
803,768 - ABID97_RS29395 0.16 +0.1

Or see this region's nucleotide sequence