Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28505 and ABID97_RS28510 are separated by 16 nucleotides ABID97_RS28510 and ABID97_RS28515 are separated by 237 nucleotides
ABID97_RS28505: ABID97_RS28505 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 620,298 to 622,598
_RS28505
ABID97_RS28510: ABID97_RS28510 - tripartite tricarboxylate transporter substrate binding protein, at 622,615 to 623,589
_RS28510
ABID97_RS28515: ABID97_RS28515 - IclR family transcriptional regulator, at 623,827 to 624,609
_RS28515
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1 at 621.630 kb on + strand, within ABID97_RS28505 at 621.653 kb on + strand, within ABID97_RS28505 at 622.004 kb on + strand, within ABID97_RS28505 at 622.005 kb on - strand, within ABID97_RS28505 at 622.123 kb on + strand, within ABID97_RS28505 at 622.549 kb on + strand at 622.550 kb on - strand at 622.616 kb on + strand at 622.616 kb on + strand at 622.616 kb on + strand at 622.616 kb on + strand at 622.746 kb on + strand, within ABID97_RS28510 at 622.826 kb on + strand, within ABID97_RS28510 at 622.826 kb on + strand, within ABID97_RS28510 at 622.827 kb on - strand, within ABID97_RS28510 at 622.827 kb on - strand, within ABID97_RS28510 at 623.040 kb on - strand, within ABID97_RS28510 at 623.126 kb on + strand, within ABID97_RS28510 at 623.210 kb on + strand, within ABID97_RS28510 at 623.210 kb on + strand, within ABID97_RS28510 at 623.210 kb on + strand, within ABID97_RS28510 at 623.211 kb on - strand, within ABID97_RS28510 at 623.211 kb on - strand, within ABID97_RS28510 at 623.211 kb on - strand, within ABID97_RS28510 at 623.355 kb on - strand, within ABID97_RS28510 at 623.447 kb on + strand, within ABID97_RS28510 at 623.522 kb on - strand at 623.537 kb on - strand at 623.613 kb on - strand at 623.613 kb on - strand at 623.694 kb on + strand at 623.749 kb on + strand at 623.803 kb on + strand at 623.804 kb on - strand at 623.804 kb on - strand at 623.804 kb on - strand at 623.823 kb on - strand at 623.823 kb on - strand at 623.823 kb on - strand at 623.962 kb on + strand, within ABID97_RS28515 at 623.962 kb on + strand, within ABID97_RS28515 at 623.962 kb on + strand, within ABID97_RS28515 at 623.962 kb on + strand, within ABID97_RS28515 at 623.963 kb on - strand, within ABID97_RS28515 at 624.037 kb on + strand, within ABID97_RS28515 at 624.037 kb on + strand, within ABID97_RS28515 at 624.037 kb on + strand, within ABID97_RS28515 at 624.038 kb on - strand, within ABID97_RS28515 at 624.038 kb on - strand, within ABID97_RS28515 at 624.044 kb on + strand, within ABID97_RS28515 at 624.044 kb on + strand, within ABID97_RS28515 at 624.045 kb on - strand, within ABID97_RS28515 at 624.076 kb on + strand, within ABID97_RS28515 at 624.076 kb on + strand, within ABID97_RS28515 at 624.076 kb on + strand, within ABID97_RS28515 at 624.464 kb on + strand, within ABID97_RS28515
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 621,630 + ABID97_RS28505 0.58 +0.1 621,653 + ABID97_RS28505 0.59 +1.2 622,004 + ABID97_RS28505 0.74 -0.4 622,005 - ABID97_RS28505 0.74 -0.3 622,123 + ABID97_RS28505 0.79 -0.4 622,549 + -0.3 622,550 - -0.2 622,616 + -0.4 622,616 + -0.4 622,616 + +0.1 622,616 + -0.6 622,746 + ABID97_RS28510 0.13 +0.1 622,826 + ABID97_RS28510 0.22 -0.5 622,826 + ABID97_RS28510 0.22 -0.1 622,827 - ABID97_RS28510 0.22 -0.1 622,827 - ABID97_RS28510 0.22 +1.5 623,040 - ABID97_RS28510 0.44 -0.2 623,126 + ABID97_RS28510 0.52 -1.1 623,210 + ABID97_RS28510 0.61 -0.6 623,210 + ABID97_RS28510 0.61 +0.1 623,210 + ABID97_RS28510 0.61 -0.7 623,211 - ABID97_RS28510 0.61 +0.8 623,211 - ABID97_RS28510 0.61 -0.6 623,211 - ABID97_RS28510 0.61 -0.2 623,355 - ABID97_RS28510 0.76 +0.5 623,447 + ABID97_RS28510 0.85 -0.4 623,522 - +0.7 623,537 - +0.4 623,613 - -1.1 623,613 - -0.1 623,694 + -1.5 623,749 + -0.5 623,803 + -1.6 623,804 - -0.9 623,804 - +1.6 623,804 - -0.8 623,823 - +0.5 623,823 - +0.6 623,823 - -0.8 623,962 + ABID97_RS28515 0.17 -0.8 623,962 + ABID97_RS28515 0.17 -0.4 623,962 + ABID97_RS28515 0.17 +0.1 623,962 + ABID97_RS28515 0.17 -0.4 623,963 - ABID97_RS28515 0.17 +0.2 624,037 + ABID97_RS28515 0.27 -1.1 624,037 + ABID97_RS28515 0.27 +0.1 624,037 + ABID97_RS28515 0.27 -1.0 624,038 - ABID97_RS28515 0.27 -0.7 624,038 - ABID97_RS28515 0.27 -1.0 624,044 + ABID97_RS28515 0.28 -2.5 624,044 + ABID97_RS28515 0.28 -1.0 624,045 - ABID97_RS28515 0.28 -1.4 624,076 + ABID97_RS28515 0.32 -0.6 624,076 + ABID97_RS28515 0.32 -0.6 624,076 + ABID97_RS28515 0.32 -0.6 624,464 + ABID97_RS28515 0.81 -0.7
Or see this region's nucleotide sequence