Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28295 and ABID97_RS28300 are separated by 176 nucleotides ABID97_RS28300 and ABID97_RS28305 are separated by 1 nucleotides ABID97_RS28305 and ABID97_RS28310 are separated by 84 nucleotides
ABID97_RS28295: ABID97_RS28295 - tRNA-uridine aminocarboxypropyltransferase, at 577,847 to 578,606
_RS28295
ABID97_RS28300: ABID97_RS28300 - acyl-CoA dehydrogenase, at 578,783 to 580,573
_RS28300
ABID97_RS28305: ABID97_RS28305 - MarR family winged helix-turn-helix transcriptional regulator, at 580,575 to 581,102
_RS28305
ABID97_RS28310: ABID97_RS28310 - alpha/beta hydrolase, at 581,187 to 581,993
_RS28310
Position (kb) 578
579
580
581 Strain fitness (log2 ratio) -1
0
1
2
3 at 578.187 kb on + strand, within ABID97_RS28295 at 578.188 kb on - strand, within ABID97_RS28295 at 578.377 kb on - strand, within ABID97_RS28295 at 578.484 kb on + strand, within ABID97_RS28295 at 578.509 kb on - strand, within ABID97_RS28295 at 578.509 kb on - strand, within ABID97_RS28295 at 578.787 kb on + strand at 578.788 kb on - strand at 580.938 kb on + strand, within ABID97_RS28305 at 581.388 kb on + strand, within ABID97_RS28310 at 581.389 kb on - strand, within ABID97_RS28310 at 581.456 kb on + strand, within ABID97_RS28310 at 581.456 kb on + strand, within ABID97_RS28310
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 578,187 + ABID97_RS28295 0.45 -0.3 578,188 - ABID97_RS28295 0.45 +0.1 578,377 - ABID97_RS28295 0.70 +0.2 578,484 + ABID97_RS28295 0.84 +0.3 578,509 - ABID97_RS28295 0.87 +1.4 578,509 - ABID97_RS28295 0.87 -0.1 578,787 + +0.7 578,788 - -0.1 580,938 + ABID97_RS28305 0.69 +3.4 581,388 + ABID97_RS28310 0.25 +1.6 581,389 - ABID97_RS28310 0.25 +1.6 581,456 + ABID97_RS28310 0.33 +1.6 581,456 + ABID97_RS28310 0.33 +1.0
Or see this region's nucleotide sequence