Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28055 and ABID97_RS28060 overlap by 4 nucleotides ABID97_RS28060 and ABID97_RS28065 overlap by 4 nucleotides
ABID97_RS28055: ABID97_RS28055 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 527,783 to 528,838
_RS28055
ABID97_RS28060: ABID97_RS28060 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 528,835 to 530,691
_RS28060
ABID97_RS28065: ABID97_RS28065 - FAD-dependent oxidoreductase, at 530,688 to 532,490
_RS28065
Position (kb) 528
529
530
531 Strain fitness (log2 ratio) -1
0
1
2 at 527.962 kb on - strand, within ABID97_RS28055 at 528.147 kb on + strand, within ABID97_RS28055 at 528.148 kb on - strand, within ABID97_RS28055 at 528.148 kb on - strand, within ABID97_RS28055 at 528.436 kb on - strand, within ABID97_RS28055 at 528.763 kb on - strand at 528.831 kb on + strand at 528.832 kb on - strand at 528.832 kb on - strand at 529.278 kb on - strand, within ABID97_RS28060 at 529.278 kb on - strand, within ABID97_RS28060 at 529.278 kb on - strand, within ABID97_RS28060 at 529.314 kb on + strand, within ABID97_RS28060 at 529.343 kb on + strand, within ABID97_RS28060 at 529.764 kb on - strand, within ABID97_RS28060 at 529.943 kb on + strand, within ABID97_RS28060 at 529.944 kb on - strand, within ABID97_RS28060 at 530.015 kb on + strand, within ABID97_RS28060 at 530.186 kb on + strand, within ABID97_RS28060 at 530.187 kb on - strand, within ABID97_RS28060 at 530.514 kb on - strand at 530.845 kb on + strand at 530.846 kb on - strand at 530.846 kb on - strand at 530.846 kb on - strand at 531.115 kb on + strand, within ABID97_RS28065 at 531.116 kb on - strand, within ABID97_RS28065 at 531.209 kb on - strand, within ABID97_RS28065
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 527,962 - ABID97_RS28055 0.17 +0.6 528,147 + ABID97_RS28055 0.34 -0.5 528,148 - ABID97_RS28055 0.35 +2.0 528,148 - ABID97_RS28055 0.35 +0.3 528,436 - ABID97_RS28055 0.62 +0.5 528,763 - -0.3 528,831 + +0.5 528,832 - +0.9 528,832 - +0.6 529,278 - ABID97_RS28060 0.24 +0.0 529,278 - ABID97_RS28060 0.24 -0.2 529,278 - ABID97_RS28060 0.24 -0.3 529,314 + ABID97_RS28060 0.26 -0.5 529,343 + ABID97_RS28060 0.27 +0.3 529,764 - ABID97_RS28060 0.50 +0.8 529,943 + ABID97_RS28060 0.60 -1.2 529,944 - ABID97_RS28060 0.60 +0.4 530,015 + ABID97_RS28060 0.64 -0.1 530,186 + ABID97_RS28060 0.73 -0.3 530,187 - ABID97_RS28060 0.73 +0.7 530,514 - +1.2 530,845 + +0.5 530,846 - -0.2 530,846 - -1.4 530,846 - +0.2 531,115 + ABID97_RS28065 0.24 +0.4 531,116 - ABID97_RS28065 0.24 +0.1 531,209 - ABID97_RS28065 0.29 -0.1
Or see this region's nucleotide sequence