Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27910 and ABID97_RS27915 are separated by 114 nucleotides ABID97_RS27915 and ABID97_RS27920 are separated by 16 nucleotides ABID97_RS27920 and ABID97_RS27925 overlap by 4 nucleotides ABID97_RS27925 and ABID97_RS27930 overlap by 4 nucleotides
ABID97_RS27910: ABID97_RS27910 - DUF3422 domain-containing protein, at 502,174 to 503,454
_RS27910
ABID97_RS27915: ABID97_RS27915 - hypothetical protein, at 503,569 to 503,799
_RS27915
ABID97_RS27920: ABID97_RS27920 - 4-hydroxy-2-oxovalerate aldolase, at 503,816 to 504,856
_RS27920
ABID97_RS27925: ABID97_RS27925 - acetaldehyde dehydrogenase (acetylating), at 504,853 to 505,812
_RS27925
ABID97_RS27930: ABID97_RS27930 - hypothetical protein, at 505,809 to 505,949
_RS27930
Position (kb) 503
504
505 Strain fitness (log2 ratio) -1
0
1 at 503.290 kb on + strand, within ABID97_RS27910 at 503.290 kb on + strand, within ABID97_RS27910 at 503.453 kb on - strand at 503.459 kb on + strand at 503.950 kb on - strand, within ABID97_RS27920 at 503.950 kb on - strand, within ABID97_RS27920 at 503.992 kb on - strand, within ABID97_RS27920 at 504.091 kb on - strand, within ABID97_RS27920 at 504.363 kb on + strand, within ABID97_RS27920 at 504.783 kb on + strand at 505.488 kb on - strand, within ABID97_RS27925
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 503,290 + ABID97_RS27910 0.87 +0.0 503,290 + ABID97_RS27910 0.87 -0.3 503,453 - -0.4 503,459 + -1.4 503,950 - ABID97_RS27920 0.13 -0.2 503,950 - ABID97_RS27920 0.13 -0.1 503,992 - ABID97_RS27920 0.17 +0.1 504,091 - ABID97_RS27920 0.26 +1.1 504,363 + ABID97_RS27920 0.53 +0.5 504,783 + +0.2 505,488 - ABID97_RS27925 0.66 -0.2
Or see this region's nucleotide sequence