Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27290

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27285 and ABID97_RS27290 are separated by 102 nucleotidesABID97_RS27290 and ABID97_RS27295 overlap by 17 nucleotidesABID97_RS27295 and ABID97_RS27300 are separated by 94 nucleotides ABID97_RS27285: ABID97_RS27285 - LysR family transcriptional regulator, at 370,626 to 371,519 _RS27285 ABID97_RS27290: ABID97_RS27290 - methyltransferase domain-containing protein, at 371,622 to 372,533 _RS27290 ABID97_RS27295: ABID97_RS27295 - SDR family oxidoreductase, at 372,517 to 373,308 _RS27295 ABID97_RS27300: ABID97_RS27300 - alpha/beta hydrolase, at 373,403 to 374,368 _RS27300 Position (kb) 371 372 373Strain fitness (log2 ratio) -1 0 1at 371.125 kb on + strand, within ABID97_RS27285at 371.125 kb on + strand, within ABID97_RS27285at 371.126 kb on - strand, within ABID97_RS27285at 371.527 kb on + strandat 371.528 kb on - strandat 371.534 kb on + strandat 372.187 kb on - strand, within ABID97_RS27290at 372.315 kb on + strand, within ABID97_RS27290

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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371,125 + ABID97_RS27285 0.56 +0.4
371,125 + ABID97_RS27285 0.56 -0.5
371,126 - ABID97_RS27285 0.56 +0.1
371,527 + +1.2
371,528 - +0.0
371,534 + -1.4
372,187 - ABID97_RS27290 0.62 +0.2
372,315 + ABID97_RS27290 0.76 +1.1

Or see this region's nucleotide sequence