Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26935 and ABID97_RS26940 are separated by 127 nucleotides ABID97_RS26940 and ABID97_RS26945 are separated by 13 nucleotides ABID97_RS26945 and ABID97_RS26950 are separated by 244 nucleotides
ABID97_RS26935: ABID97_RS26935 - GlxA family transcriptional regulator, at 309,922 to 310,875
_RS26935
ABID97_RS26940: ABID97_RS26940 - hypothetical protein, at 311,003 to 311,203
_RS26940
ABID97_RS26945: ABID97_RS26945 - DUF3606 domain-containing protein, at 311,217 to 311,399
_RS26945
ABID97_RS26950: ABID97_RS26950 - elongation factor G, at 311,644 to 313,710
_RS26950
Position (kb) 311
312 Strain fitness (log2 ratio) -1
0
1 at 310.366 kb on + strand, within ABID97_RS26935 at 310.852 kb on + strand at 310.964 kb on + strand at 310.964 kb on + strand at 310.964 kb on + strand at 310.965 kb on - strand at 310.965 kb on - strand at 310.966 kb on + strand at 310.966 kb on + strand at 310.966 kb on + strand at 310.966 kb on + strand at 310.967 kb on - strand at 310.967 kb on - strand at 311.004 kb on + strand at 311.004 kb on + strand at 311.005 kb on - strand at 311.005 kb on - strand at 311.005 kb on - strand at 311.239 kb on + strand, within ABID97_RS26945
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 310,366 + ABID97_RS26935 0.47 -1.3 310,852 + +1.0 310,964 + +0.5 310,964 + -0.2 310,964 + -0.3 310,965 - -0.6 310,965 - +0.1 310,966 + +0.0 310,966 + +1.0 310,966 + +0.3 310,966 + +0.4 310,967 - -0.3 310,967 - -0.6 311,004 + -0.2 311,004 + -0.3 311,005 - -0.4 311,005 - +0.4 311,005 - +1.0 311,239 + ABID97_RS26945 0.12 +0.9
Or see this region's nucleotide sequence