Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26915 and ABID97_RS26920 are separated by 19 nucleotides ABID97_RS26920 and ABID97_RS26925 are separated by 20 nucleotides ABID97_RS26925 and ABID97_RS26930 are separated by 42 nucleotides
ABID97_RS26915: ABID97_RS26915 - tripartite tricarboxylate transporter substrate-binding protein, at 305,980 to 306,972
_RS26915
ABID97_RS26920: ABID97_RS26920 - DUF4863 family protein, at 306,992 to 307,534
_RS26920
ABID97_RS26925: ABID97_RS26925 - MFS transporter, at 307,555 to 308,766
_RS26925
ABID97_RS26930: ABID97_RS26930 - SLAC1 anion channel family protein, at 308,809 to 309,807
_RS26930
Position (kb) 307
308
309 Strain fitness (log2 ratio) -1
0
1
2 at 306.602 kb on - strand, within ABID97_RS26915 at 306.602 kb on - strand, within ABID97_RS26915 at 306.602 kb on - strand, within ABID97_RS26915 at 306.632 kb on + strand, within ABID97_RS26915 at 306.760 kb on + strand, within ABID97_RS26915 at 306.760 kb on + strand, within ABID97_RS26915 at 306.761 kb on - strand, within ABID97_RS26915 at 306.895 kb on + strand at 307.118 kb on + strand, within ABID97_RS26920 at 307.259 kb on + strand, within ABID97_RS26920 at 307.260 kb on - strand, within ABID97_RS26920 at 307.706 kb on - strand, within ABID97_RS26925 at 308.209 kb on + strand, within ABID97_RS26925 at 308.209 kb on + strand, within ABID97_RS26925 at 308.210 kb on - strand, within ABID97_RS26925 at 308.210 kb on - strand, within ABID97_RS26925 at 308.210 kb on - strand, within ABID97_RS26925 at 308.211 kb on + strand, within ABID97_RS26925 at 308.212 kb on - strand, within ABID97_RS26925 at 308.212 kb on - strand, within ABID97_RS26925 at 308.555 kb on - strand, within ABID97_RS26925 at 308.939 kb on + strand, within ABID97_RS26930 at 308.940 kb on - strand, within ABID97_RS26930 at 308.940 kb on - strand, within ABID97_RS26930 at 309.604 kb on + strand, within ABID97_RS26930
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 306,602 - ABID97_RS26915 0.63 -0.4 306,602 - ABID97_RS26915 0.63 +0.0 306,602 - ABID97_RS26915 0.63 +0.2 306,632 + ABID97_RS26915 0.66 +1.7 306,760 + ABID97_RS26915 0.79 -1.3 306,760 + ABID97_RS26915 0.79 +0.1 306,761 - ABID97_RS26915 0.79 -0.6 306,895 + +0.9 307,118 + ABID97_RS26920 0.23 +0.6 307,259 + ABID97_RS26920 0.49 -0.5 307,260 - ABID97_RS26920 0.49 +0.5 307,706 - ABID97_RS26925 0.12 +0.3 308,209 + ABID97_RS26925 0.54 -0.4 308,209 + ABID97_RS26925 0.54 -0.0 308,210 - ABID97_RS26925 0.54 +0.4 308,210 - ABID97_RS26925 0.54 +0.3 308,210 - ABID97_RS26925 0.54 -0.4 308,211 + ABID97_RS26925 0.54 -0.3 308,212 - ABID97_RS26925 0.54 -0.2 308,212 - ABID97_RS26925 0.54 -0.7 308,555 - ABID97_RS26925 0.83 +2.2 308,939 + ABID97_RS26930 0.13 -0.9 308,940 - ABID97_RS26930 0.13 +1.4 308,940 - ABID97_RS26930 0.13 +1.7 309,604 + ABID97_RS26930 0.80 +0.1
Or see this region's nucleotide sequence