Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26905

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26895 and ABID97_RS26900 are separated by 32 nucleotidesABID97_RS26900 and ABID97_RS26905 are separated by 155 nucleotidesABID97_RS26905 and ABID97_RS26910 are separated by 94 nucleotides ABID97_RS26895: ABID97_RS26895 - citrate synthase family protein, at 302,357 to 303,523 _RS26895 ABID97_RS26900: ABID97_RS26900 - cupin domain-containing protein, at 303,556 to 303,936 _RS26900 ABID97_RS26905: ABID97_RS26905 - nitroreductase, at 304,092 to 304,778 _RS26905 ABID97_RS26910: ABID97_RS26910 - LysR family transcriptional regulator, at 304,873 to 305,841 _RS26910 Position (kb) 304 305Strain fitness (log2 ratio) -1 0 1at 303.656 kb on + strand, within ABID97_RS26900at 303.728 kb on + strandat 304.183 kb on + strand, within ABID97_RS26905at 304.474 kb on + strand, within ABID97_RS26905at 304.475 kb on - strand, within ABID97_RS26905

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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303,656 + ABID97_RS26900 0.26 +0.2
303,728 + +1.7
304,183 + ABID97_RS26905 0.13 -0.4
304,474 + ABID97_RS26905 0.56 -0.4
304,475 - ABID97_RS26905 0.56 -1.2

Or see this region's nucleotide sequence