Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26805

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26800 and ABID97_RS26805 overlap by 4 nucleotidesABID97_RS26805 and ABID97_RS26810 are separated by 59 nucleotides ABID97_RS26800: ABID97_RS26800 - bestrophin family ion channel, at 284,589 to 285,566 _RS26800 ABID97_RS26805: ABID97_RS26805 - SDR family oxidoreductase, at 285,563 to 286,306 _RS26805 ABID97_RS26810: ABID97_RS26810 - DJ-1/PfpI family protein, at 286,366 to 287,406 _RS26810 Position (kb) 285 286 287Strain fitness (log2 ratio) -1 0 1at 284.758 kb on + strand, within ABID97_RS26800at 287.183 kb on - strand, within ABID97_RS26810

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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284,758 + ABID97_RS26800 0.17 -0.4
287,183 - ABID97_RS26810 0.78 +0.7

Or see this region's nucleotide sequence