Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26540

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26535 and ABID97_RS26540 are separated by 13 nucleotidesABID97_RS26540 and ABID97_RS26545 are separated by 9 nucleotidesABID97_RS26545 and ABID97_RS26550 are separated by 17 nucleotides ABID97_RS26535: ABID97_RS26535 - dihydrolipoyllysine-residue acetyltransferase, at 226,093 to 227,694 _RS26535 ABID97_RS26540: ABID97_RS26540 - dihydrolipoyl dehydrogenase, at 227,708 to 229,504 _RS26540 ABID97_RS26545: ABID97_RS26545 - alpha/beta fold hydrolase, at 229,514 to 230,308 _RS26545 ABID97_RS26550: ABID97_RS26550 - NADP-dependent malic enzyme, at 230,326 to 232,611 _RS26550 Position (kb) 227 228 229 230Strain fitness (log2 ratio) -1 0 1 2 3 4at 227.276 kb on - strand, within ABID97_RS26535at 227.476 kb on + strand, within ABID97_RS26535at 227.566 kb on + strandat 228.078 kb on - strand, within ABID97_RS26540at 228.195 kb on - strand, within ABID97_RS26540at 228.875 kb on + strand, within ABID97_RS26540at 229.694 kb on + strand, within ABID97_RS26545at 229.859 kb on + strand, within ABID97_RS26545

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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227,276 - ABID97_RS26535 0.74 +2.6
227,476 + ABID97_RS26535 0.86 +1.2
227,566 + +2.1
228,078 - ABID97_RS26540 0.21 +4.0
228,195 - ABID97_RS26540 0.27 +4.5
228,875 + ABID97_RS26540 0.65 +0.1
229,694 + ABID97_RS26545 0.23 +2.3
229,859 + ABID97_RS26545 0.43 +3.3

Or see this region's nucleotide sequence