Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26075 and ABID97_RS26080 are separated by 43 nucleotides ABID97_RS26080 and ABID97_RS26085 overlap by 4 nucleotides ABID97_RS26085 and ABID97_RS26090 are separated by 232 nucleotides
ABID97_RS26075: ABID97_RS26075 - hypothetical protein, at 139,379 to 140,083
_RS26075
ABID97_RS26080: ABID97_RS26080 - LytTR family DNA-binding domain-containing protein, at 140,127 to 140,921
_RS26080
ABID97_RS26085: ABID97_RS26085 - histidine kinase, at 140,918 to 141,982
_RS26085
ABID97_RS26090: ABID97_RS26090 - homoserine O-acetyltransferase, at 142,215 to 143,396
_RS26090
Position (kb) 140
141
142 Strain fitness (log2 ratio) -1
0
1
2
3 at 140.019 kb on - strand at 140.129 kb on - strand at 140.363 kb on - strand, within ABID97_RS26080 at 140.606 kb on - strand, within ABID97_RS26080 at 140.651 kb on - strand, within ABID97_RS26080 at 140.994 kb on + strand at 140.994 kb on + strand at 140.995 kb on - strand at 141.636 kb on + strand, within ABID97_RS26085 at 141.637 kb on - strand, within ABID97_RS26085 at 142.018 kb on + strand at 142.477 kb on - strand, within ABID97_RS26090
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 140,019 - +1.5 140,129 - -0.5 140,363 - ABID97_RS26080 0.30 +0.0 140,606 - ABID97_RS26080 0.60 -0.4 140,651 - ABID97_RS26080 0.66 -1.0 140,994 + -0.3 140,994 + -0.4 140,995 - +0.9 141,636 + ABID97_RS26085 0.67 +1.2 141,637 - ABID97_RS26085 0.68 -0.5 142,018 + +3.0 142,477 - ABID97_RS26090 0.22 -0.0
Or see this region's nucleotide sequence