Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25990

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25985 and ABID97_RS25990 are separated by 26 nucleotidesABID97_RS25990 and ABID97_RS25995 are separated by 31 nucleotidesABID97_RS25995 and ABID97_RS26000 are separated by 27 nucleotides ABID97_RS25985: ABID97_RS25985 - CaiB/BaiF CoA-transferase family protein, at 120,639 to 121,880 _RS25985 ABID97_RS25990: ABID97_RS25990 - aldehyde dehydrogenase, at 121,907 to 123,397 _RS25990 ABID97_RS25995: ABID97_RS25995 - SDR family oxidoreductase, at 123,429 to 124,217 _RS25995 ABID97_RS26000: ABID97_RS26000 - quinone oxidoreductase, at 124,245 to 125,228 _RS26000 Position (kb) 121 122 123 124Strain fitness (log2 ratio) -1 0 1at 121.502 kb on + strand, within ABID97_RS25985at 121.502 kb on + strand, within ABID97_RS25985at 121.502 kb on + strand, within ABID97_RS25985at 121.578 kb on + strand, within ABID97_RS25985at 122.256 kb on - strand, within ABID97_RS25990at 122.627 kb on + strand, within ABID97_RS25990at 122.628 kb on - strand, within ABID97_RS25990at 122.931 kb on - strand, within ABID97_RS25990at 122.931 kb on - strand, within ABID97_RS25990at 124.375 kb on - strand, within ABID97_RS26000

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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121,502 + ABID97_RS25985 0.69 -0.6
121,502 + ABID97_RS25985 0.69 -1.0
121,502 + ABID97_RS25985 0.69 +0.1
121,578 + ABID97_RS25985 0.76 +0.9
122,256 - ABID97_RS25990 0.23 -0.1
122,627 + ABID97_RS25990 0.48 -0.8
122,628 - ABID97_RS25990 0.48 +0.2
122,931 - ABID97_RS25990 0.69 -0.4
122,931 - ABID97_RS25990 0.69 -0.3
124,375 - ABID97_RS26000 0.13 +1.0

Or see this region's nucleotide sequence