Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24855 and ABID97_RS24860 are separated by 137 nucleotides ABID97_RS24860 and ABID97_RS24865 are separated by 12 nucleotides ABID97_RS24865 and ABID97_RS24870 are separated by 94 nucleotides
ABID97_RS24855: ABID97_RS24855 - c-type cytochrome, at 5,149,937 to 5,151,223
_RS24855
ABID97_RS24860: ABID97_RS24860 - hypothetical protein, at 5,151,361 to 5,151,609
_RS24860
ABID97_RS24865: ABID97_RS24865 - UDP-2,3-diacylglucosamine diphosphatase, at 5,151,622 to 5,152,491
_RS24865
ABID97_RS24870: ABID97_RS24870 - CDF family Co(II)/Ni(II) efflux transporter DmeF, at 5,152,586 to 5,153,545
_RS24870
Position (kb) 5151
5152 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.458 kb on - strand, within ABID97_RS24855 at 5150.458 kb on - strand, within ABID97_RS24855 at 5150.534 kb on + strand, within ABID97_RS24855 at 5150.648 kb on + strand, within ABID97_RS24855 at 5150.649 kb on - strand, within ABID97_RS24855 at 5150.792 kb on + strand, within ABID97_RS24855 at 5150.793 kb on - strand, within ABID97_RS24855 at 5150.793 kb on - strand, within ABID97_RS24855 at 5150.828 kb on + strand, within ABID97_RS24855 at 5150.829 kb on - strand, within ABID97_RS24855 at 5150.930 kb on + strand, within ABID97_RS24855 at 5150.931 kb on - strand, within ABID97_RS24855 at 5151.066 kb on - strand, within ABID97_RS24855 at 5151.099 kb on - strand at 5151.415 kb on + strand, within ABID97_RS24860 at 5151.416 kb on - strand, within ABID97_RS24860 at 5151.547 kb on + strand, within ABID97_RS24860 at 5151.548 kb on - strand, within ABID97_RS24860 at 5151.548 kb on - strand, within ABID97_RS24860 at 5151.568 kb on + strand, within ABID97_RS24860 at 5151.569 kb on - strand, within ABID97_RS24860 at 5151.762 kb on - strand, within ABID97_RS24865 at 5151.875 kb on + strand, within ABID97_RS24865 at 5151.875 kb on + strand, within ABID97_RS24865 at 5151.876 kb on - strand, within ABID97_RS24865 at 5151.876 kb on - strand, within ABID97_RS24865 at 5151.876 kb on - strand, within ABID97_RS24865 at 5151.876 kb on - strand, within ABID97_RS24865 at 5151.876 kb on - strand, within ABID97_RS24865 at 5151.909 kb on - strand, within ABID97_RS24865 at 5151.909 kb on - strand, within ABID97_RS24865 at 5151.926 kb on + strand, within ABID97_RS24865 at 5152.140 kb on - strand, within ABID97_RS24865 at 5152.140 kb on - strand, within ABID97_RS24865 at 5152.247 kb on + strand, within ABID97_RS24865
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 5,150,366 + ABID97_RS24855 0.33 +0.0 5,150,366 + ABID97_RS24855 0.33 -1.4 5,150,366 + ABID97_RS24855 0.33 -0.0 5,150,366 + ABID97_RS24855 0.33 +2.9 5,150,367 - ABID97_RS24855 0.33 +0.2 5,150,367 - ABID97_RS24855 0.33 -0.2 5,150,367 - ABID97_RS24855 0.33 -0.4 5,150,367 - ABID97_RS24855 0.33 +1.0 5,150,458 - ABID97_RS24855 0.40 -0.1 5,150,458 - ABID97_RS24855 0.40 -1.5 5,150,534 + ABID97_RS24855 0.46 +0.3 5,150,648 + ABID97_RS24855 0.55 +0.5 5,150,649 - ABID97_RS24855 0.55 -0.2 5,150,792 + ABID97_RS24855 0.66 -0.5 5,150,793 - ABID97_RS24855 0.67 -0.8 5,150,793 - ABID97_RS24855 0.67 -0.4 5,150,828 + ABID97_RS24855 0.69 +1.6 5,150,829 - ABID97_RS24855 0.69 -1.8 5,150,930 + ABID97_RS24855 0.77 -0.1 5,150,931 - ABID97_RS24855 0.77 -2.2 5,151,066 - ABID97_RS24855 0.88 -0.3 5,151,099 - -0.7 5,151,415 + ABID97_RS24860 0.22 +0.1 5,151,416 - ABID97_RS24860 0.22 -0.2 5,151,547 + ABID97_RS24860 0.75 -0.6 5,151,548 - ABID97_RS24860 0.75 +1.5 5,151,548 - ABID97_RS24860 0.75 +0.2 5,151,568 + ABID97_RS24860 0.83 +0.1 5,151,569 - ABID97_RS24860 0.84 -0.3 5,151,762 - ABID97_RS24865 0.16 +0.0 5,151,875 + ABID97_RS24865 0.29 -0.2 5,151,875 + ABID97_RS24865 0.29 +0.0 5,151,876 - ABID97_RS24865 0.29 -0.3 5,151,876 - ABID97_RS24865 0.29 -0.1 5,151,876 - ABID97_RS24865 0.29 -0.2 5,151,876 - ABID97_RS24865 0.29 -0.2 5,151,876 - ABID97_RS24865 0.29 -0.6 5,151,909 - ABID97_RS24865 0.33 -0.8 5,151,909 - ABID97_RS24865 0.33 -0.4 5,151,926 + ABID97_RS24865 0.35 +0.3 5,152,140 - ABID97_RS24865 0.60 +0.3 5,152,140 - ABID97_RS24865 0.60 +0.3 5,152,247 + ABID97_RS24865 0.72 -0.9
Or see this region's nucleotide sequence