Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24180 and ABID97_RS24185 are separated by 87 nucleotides ABID97_RS24185 and ABID97_RS24190 are separated by 131 nucleotides ABID97_RS24190 and ABID97_RS24195 are separated by 43 nucleotides ABID97_RS24195 and ABID97_RS24200 are separated by 2 nucleotides
ABID97_RS24180: ABID97_RS24180 - response regulator, at 4,997,291 to 4,998,031
_RS24180
ABID97_RS24185: ABID97_RS24185 - thioredoxin family protein, at 4,998,119 to 4,998,703
_RS24185
ABID97_RS24190: ABID97_RS24190 - 3-oxoadipyl-CoA thiolase, at 4,998,835 to 5,000,040
_RS24190
ABID97_RS24195: ABID97_RS24195 - 3-oxoacid CoA-transferase subunit B, at 5,000,084 to 5,000,734
_RS24195
ABID97_RS24200: ABID97_RS24200 - 3-oxoacid CoA-transferase subunit A, at 5,000,737 to 5,001,438
_RS24200
Position (kb) 4998
4999
5000
5001 Strain fitness (log2 ratio) -1
0
1
2 at 4997.970 kb on - strand at 4997.996 kb on + strand at 4997.996 kb on + strand at 4997.996 kb on + strand at 4997.996 kb on + strand at 4997.997 kb on - strand at 4998.152 kb on + strand at 4998.153 kb on - strand at 4998.153 kb on - strand at 4998.153 kb on - strand at 4998.210 kb on + strand, within ABID97_RS24185 at 4998.234 kb on + strand, within ABID97_RS24185 at 4998.264 kb on + strand, within ABID97_RS24185 at 4998.309 kb on + strand, within ABID97_RS24185 at 4998.309 kb on + strand, within ABID97_RS24185 at 4998.309 kb on + strand, within ABID97_RS24185 at 4998.309 kb on + strand, within ABID97_RS24185 at 4998.310 kb on - strand, within ABID97_RS24185 at 4998.310 kb on - strand, within ABID97_RS24185 at 4998.310 kb on - strand, within ABID97_RS24185 at 4998.310 kb on - strand, within ABID97_RS24185 at 4998.310 kb on - strand, within ABID97_RS24185 at 4998.310 kb on - strand, within ABID97_RS24185 at 4998.438 kb on + strand, within ABID97_RS24185 at 4998.439 kb on - strand, within ABID97_RS24185 at 4998.495 kb on + strand, within ABID97_RS24185 at 4998.495 kb on + strand, within ABID97_RS24185 at 4998.495 kb on + strand, within ABID97_RS24185 at 4998.495 kb on + strand, within ABID97_RS24185 at 4998.496 kb on - strand, within ABID97_RS24185 at 4998.496 kb on - strand, within ABID97_RS24185 at 4998.791 kb on - strand at 4998.791 kb on - strand at 4998.791 kb on - strand at 4998.800 kb on + strand at 4998.824 kb on + strand at 4998.824 kb on + strand at 4998.824 kb on + strand at 4998.824 kb on + strand at 4998.824 kb on + strand at 4998.824 kb on + strand at 4998.825 kb on - strand at 4998.825 kb on - strand at 4998.825 kb on - strand at 4999.616 kb on + strand, within ABID97_RS24190 at 5000.200 kb on - strand, within ABID97_RS24195 at 5000.200 kb on - strand, within ABID97_RS24195 at 5000.235 kb on + strand, within ABID97_RS24195 at 5000.526 kb on + strand, within ABID97_RS24195 at 5000.526 kb on + strand, within ABID97_RS24195 at 5000.526 kb on + strand, within ABID97_RS24195 at 5000.527 kb on - strand, within ABID97_RS24195 at 5000.718 kb on + strand at 5000.718 kb on + strand at 5000.718 kb on + strand at 5000.718 kb on + strand at 5000.997 kb on - strand, within ABID97_RS24200 at 5001.008 kb on + strand, within ABID97_RS24200 at 5001.008 kb on + strand, within ABID97_RS24200 at 5001.008 kb on + strand, within ABID97_RS24200 at 5001.008 kb on + strand, within ABID97_RS24200 at 5001.009 kb on - strand, within ABID97_RS24200
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,997,970 - -0.3 4,997,996 + -0.6 4,997,996 + +0.9 4,997,996 + -0.4 4,997,996 + -0.6 4,997,997 - -0.2 4,998,152 + -0.2 4,998,153 - -0.1 4,998,153 - -0.1 4,998,153 - -0.4 4,998,210 + ABID97_RS24185 0.16 +0.2 4,998,234 + ABID97_RS24185 0.20 +0.3 4,998,264 + ABID97_RS24185 0.25 +1.4 4,998,309 + ABID97_RS24185 0.32 -0.1 4,998,309 + ABID97_RS24185 0.32 +0.5 4,998,309 + ABID97_RS24185 0.32 +0.5 4,998,309 + ABID97_RS24185 0.32 -0.1 4,998,310 - ABID97_RS24185 0.33 -0.1 4,998,310 - ABID97_RS24185 0.33 -0.2 4,998,310 - ABID97_RS24185 0.33 +0.1 4,998,310 - ABID97_RS24185 0.33 +0.5 4,998,310 - ABID97_RS24185 0.33 -0.2 4,998,310 - ABID97_RS24185 0.33 -0.8 4,998,438 + ABID97_RS24185 0.55 -0.7 4,998,439 - ABID97_RS24185 0.55 -0.6 4,998,495 + ABID97_RS24185 0.64 -0.2 4,998,495 + ABID97_RS24185 0.64 -0.3 4,998,495 + ABID97_RS24185 0.64 +0.3 4,998,495 + ABID97_RS24185 0.64 +0.7 4,998,496 - ABID97_RS24185 0.64 -0.0 4,998,496 - ABID97_RS24185 0.64 -0.4 4,998,791 - +1.7 4,998,791 - -0.6 4,998,791 - -0.0 4,998,800 + -0.0 4,998,824 + +0.8 4,998,824 + -0.2 4,998,824 + -0.1 4,998,824 + -0.8 4,998,824 + -0.2 4,998,824 + +1.1 4,998,825 - -0.3 4,998,825 - -0.2 4,998,825 - +0.1 4,999,616 + ABID97_RS24190 0.65 -1.5 5,000,200 - ABID97_RS24195 0.18 +0.2 5,000,200 - ABID97_RS24195 0.18 -0.1 5,000,235 + ABID97_RS24195 0.23 -0.2 5,000,526 + ABID97_RS24195 0.68 -0.0 5,000,526 + ABID97_RS24195 0.68 -0.2 5,000,526 + ABID97_RS24195 0.68 +0.3 5,000,527 - ABID97_RS24195 0.68 +1.5 5,000,718 + -0.1 5,000,718 + +0.5 5,000,718 + -0.5 5,000,718 + +1.9 5,000,997 - ABID97_RS24200 0.37 -0.2 5,001,008 + ABID97_RS24200 0.39 +1.4 5,001,008 + ABID97_RS24200 0.39 +1.2 5,001,008 + ABID97_RS24200 0.39 +1.2 5,001,008 + ABID97_RS24200 0.39 +0.1 5,001,009 - ABID97_RS24200 0.39 -0.5
Or see this region's nucleotide sequence