Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24055 and ABID97_RS24060 are separated by 127 nucleotides ABID97_RS24060 and ABID97_RS24065 are separated by 69 nucleotides ABID97_RS24065 and ABID97_RS24070 are separated by 18 nucleotides ABID97_RS24070 and ABID97_RS24075 are separated by 35 nucleotides
ABID97_RS24055: ABID97_RS24055 - TetR/AcrR family transcriptional regulator, at 4,972,795 to 4,973,457
_RS24055
ABID97_RS24060: ABID97_RS24060 - VOC family protein, at 4,973,585 to 4,974,001
_RS24060
ABID97_RS24065: ABID97_RS24065 - SRPBCC family protein, at 4,974,071 to 4,974,598
_RS24065
ABID97_RS24070: ABID97_RS24070 - VOC family protein, at 4,974,617 to 4,975,036
_RS24070
ABID97_RS24075: ABID97_RS24075 - DHA2 family efflux MFS transporter permease subunit, at 4,975,072 to 4,976,559
_RS24075
Position (kb) 4974
4975 Strain fitness (log2 ratio) -2
-1
0
1 at 4973.402 kb on + strand at 4973.643 kb on - strand, within ABID97_RS24060 at 4974.125 kb on + strand, within ABID97_RS24065 at 4974.125 kb on + strand, within ABID97_RS24065 at 4974.126 kb on - strand, within ABID97_RS24065 at 4974.126 kb on - strand, within ABID97_RS24065 at 4974.308 kb on + strand, within ABID97_RS24065 at 4974.309 kb on - strand, within ABID97_RS24065 at 4974.309 kb on - strand, within ABID97_RS24065 at 4974.309 kb on - strand, within ABID97_RS24065 at 4974.521 kb on + strand, within ABID97_RS24065 at 4974.596 kb on + strand at 4974.596 kb on + strand at 4974.635 kb on + strand at 4974.635 kb on + strand at 4974.635 kb on + strand at 4974.677 kb on + strand, within ABID97_RS24070 at 4974.677 kb on + strand, within ABID97_RS24070 at 4974.677 kb on + strand, within ABID97_RS24070 at 4974.678 kb on - strand, within ABID97_RS24070 at 4974.839 kb on + strand, within ABID97_RS24070 at 4974.839 kb on + strand, within ABID97_RS24070 at 4974.840 kb on - strand, within ABID97_RS24070 at 4975.240 kb on + strand, within ABID97_RS24075 at 4975.240 kb on + strand, within ABID97_RS24075 at 4975.240 kb on + strand, within ABID97_RS24075 at 4975.241 kb on - strand, within ABID97_RS24075 at 4975.241 kb on - strand, within ABID97_RS24075 at 4975.294 kb on + strand, within ABID97_RS24075 at 4975.294 kb on + strand, within ABID97_RS24075 at 4975.294 kb on + strand, within ABID97_RS24075 at 4975.498 kb on + strand, within ABID97_RS24075 at 4975.499 kb on - strand, within ABID97_RS24075 at 4975.499 kb on - strand, within ABID97_RS24075 at 4975.499 kb on - strand, within ABID97_RS24075
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,973,402 + +0.8 4,973,643 - ABID97_RS24060 0.14 -0.4 4,974,125 + ABID97_RS24065 0.10 -1.1 4,974,125 + ABID97_RS24065 0.10 -0.3 4,974,126 - ABID97_RS24065 0.10 -0.5 4,974,126 - ABID97_RS24065 0.10 -0.6 4,974,308 + ABID97_RS24065 0.45 +0.0 4,974,309 - ABID97_RS24065 0.45 -0.5 4,974,309 - ABID97_RS24065 0.45 -0.5 4,974,309 - ABID97_RS24065 0.45 -0.0 4,974,521 + ABID97_RS24065 0.85 -0.0 4,974,596 + -0.6 4,974,596 + -0.5 4,974,635 + +0.1 4,974,635 + -1.1 4,974,635 + -0.6 4,974,677 + ABID97_RS24070 0.14 +0.7 4,974,677 + ABID97_RS24070 0.14 -0.3 4,974,677 + ABID97_RS24070 0.14 +0.1 4,974,678 - ABID97_RS24070 0.15 -0.1 4,974,839 + ABID97_RS24070 0.53 +0.4 4,974,839 + ABID97_RS24070 0.53 +0.1 4,974,840 - ABID97_RS24070 0.53 +0.3 4,975,240 + ABID97_RS24075 0.11 +1.1 4,975,240 + ABID97_RS24075 0.11 +0.0 4,975,240 + ABID97_RS24075 0.11 -0.2 4,975,241 - ABID97_RS24075 0.11 +0.2 4,975,241 - ABID97_RS24075 0.11 -0.4 4,975,294 + ABID97_RS24075 0.15 -2.0 4,975,294 + ABID97_RS24075 0.15 +1.2 4,975,294 + ABID97_RS24075 0.15 -0.8 4,975,498 + ABID97_RS24075 0.29 -0.2 4,975,499 - ABID97_RS24075 0.29 +0.2 4,975,499 - ABID97_RS24075 0.29 +0.0 4,975,499 - ABID97_RS24075 0.29 -0.0
Or see this region's nucleotide sequence