Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22940 and ABID97_RS22945 are separated by 15 nucleotides ABID97_RS22945 and ABID97_RS22950 are separated by 192 nucleotides
ABID97_RS22940: ABID97_RS22940 - single-stranded-DNA-specific exonuclease RecJ, at 4,747,827 to 4,749,551
_RS22940
ABID97_RS22945: ABID97_RS22945 - DUF1003 domain-containing protein, at 4,749,567 to 4,750,187
_RS22945
ABID97_RS22950: ABID97_RS22950 - SDR family oxidoreductase, at 4,750,380 to 4,751,402
_RS22950
Position (kb) 4749
4750
4751 Strain fitness (log2 ratio) -1
0
1
2 at 4748.608 kb on + strand, within ABID97_RS22940 at 4748.609 kb on - strand, within ABID97_RS22940 at 4748.908 kb on + strand, within ABID97_RS22940 at 4749.988 kb on + strand, within ABID97_RS22945 at 4749.988 kb on + strand, within ABID97_RS22945 at 4749.989 kb on - strand, within ABID97_RS22945 at 4749.989 kb on - strand, within ABID97_RS22945 at 4750.194 kb on + strand at 4750.195 kb on - strand at 4750.247 kb on - strand at 4750.346 kb on + strand at 4750.642 kb on - strand, within ABID97_RS22950 at 4750.642 kb on - strand, within ABID97_RS22950 at 4750.642 kb on - strand, within ABID97_RS22950 at 4750.725 kb on + strand, within ABID97_RS22950 at 4750.725 kb on + strand, within ABID97_RS22950 at 4750.725 kb on + strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.726 kb on - strand, within ABID97_RS22950 at 4750.758 kb on + strand, within ABID97_RS22950 at 4751.008 kb on - strand, within ABID97_RS22950
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,748,608 + ABID97_RS22940 0.45 +0.5 4,748,609 - ABID97_RS22940 0.45 +0.6 4,748,908 + ABID97_RS22940 0.63 -0.3 4,749,988 + ABID97_RS22945 0.68 -0.2 4,749,988 + ABID97_RS22945 0.68 +0.2 4,749,989 - ABID97_RS22945 0.68 +0.1 4,749,989 - ABID97_RS22945 0.68 -0.2 4,750,194 + -0.5 4,750,195 - -0.3 4,750,247 - +0.1 4,750,346 + -0.6 4,750,642 - ABID97_RS22950 0.26 +1.9 4,750,642 - ABID97_RS22950 0.26 -0.7 4,750,642 - ABID97_RS22950 0.26 -0.1 4,750,725 + ABID97_RS22950 0.34 -0.2 4,750,725 + ABID97_RS22950 0.34 -0.3 4,750,725 + ABID97_RS22950 0.34 -1.0 4,750,726 - ABID97_RS22950 0.34 -0.4 4,750,726 - ABID97_RS22950 0.34 -0.2 4,750,726 - ABID97_RS22950 0.34 -0.2 4,750,726 - ABID97_RS22950 0.34 -0.5 4,750,726 - ABID97_RS22950 0.34 -0.2 4,750,758 + ABID97_RS22950 0.37 +1.3 4,751,008 - ABID97_RS22950 0.61 -0.1
Or see this region's nucleotide sequence