Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22865

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22855 and ABID97_RS22860 overlap by 7 nucleotidesABID97_RS22860 and ABID97_RS22865 are separated by 10 nucleotidesABID97_RS22865 and ABID97_RS22870 overlap by 4 nucleotides ABID97_RS22855: ABID97_RS22855 - D-aminoacylase, at 4,731,764 to 4,733,251 _RS22855 ABID97_RS22860: ABID97_RS22860 - MurR/RpiR family transcriptional regulator, at 4,733,245 to 4,734,156 _RS22860 ABID97_RS22865: ABID97_RS22865 - amino acid deaminase, at 4,734,167 to 4,735,483 _RS22865 ABID97_RS22870: ABID97_RS22870 - ABC transporter ATP-binding protein, at 4,735,480 to 4,736,457 _RS22870 Position (kb) 4734 4735 4736Strain fitness (log2 ratio) -2 -1 0 1at 4733.430 kb on - strand, within ABID97_RS22860at 4733.751 kb on - strand, within ABID97_RS22860at 4733.751 kb on - strand, within ABID97_RS22860at 4734.201 kb on + strandat 4734.328 kb on - strand, within ABID97_RS22865at 4734.582 kb on + strand, within ABID97_RS22865at 4734.606 kb on + strand, within ABID97_RS22865at 4734.607 kb on - strand, within ABID97_RS22865at 4734.786 kb on + strand, within ABID97_RS22865at 4734.787 kb on - strand, within ABID97_RS22865at 4734.787 kb on - strand, within ABID97_RS22865at 4735.526 kb on + strandat 4735.527 kb on - strandat 4735.781 kb on + strand, within ABID97_RS22870at 4735.781 kb on + strand, within ABID97_RS22870at 4735.809 kb on - strand, within ABID97_RS22870

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,733,430 - ABID97_RS22860 0.20 +0.6
4,733,751 - ABID97_RS22860 0.55 -1.4
4,733,751 - ABID97_RS22860 0.55 -1.8
4,734,201 + -0.3
4,734,328 - ABID97_RS22865 0.12 -1.6
4,734,582 + ABID97_RS22865 0.32 -0.2
4,734,606 + ABID97_RS22865 0.33 -0.1
4,734,607 - ABID97_RS22865 0.33 -0.3
4,734,786 + ABID97_RS22865 0.47 -0.7
4,734,787 - ABID97_RS22865 0.47 +0.7
4,734,787 - ABID97_RS22865 0.47 +0.1
4,735,526 + -0.2
4,735,527 - -0.4
4,735,781 + ABID97_RS22870 0.31 +1.1
4,735,781 + ABID97_RS22870 0.31 -0.4
4,735,809 - ABID97_RS22870 0.34 -0.1

Or see this region's nucleotide sequence