Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22345 and ABID97_RS22350 overlap by 1 nucleotides ABID97_RS22350 and ABID97_RS22355 are separated by 8 nucleotides ABID97_RS22355 and ABID97_RS22360 are separated by 10 nucleotides ABID97_RS22360 and ABID97_RS22365 are separated by 6 nucleotides ABID97_RS22365 and ABID97_RS22370 are separated by 43 nucleotides
ABID97_RS22345: ABID97_RS22345 - ABC transporter substrate-binding protein, at 4,631,804 to 4,632,838
_RS22345
ABID97_RS22350: ABID97_RS22350 - ABC transporter ATP-binding protein, at 4,632,838 to 4,633,698
_RS22350
ABID97_RS22355: ABID97_RS22355 - ABC transporter permease, at 4,633,707 to 4,634,477
_RS22355
ABID97_RS22360: ABID97_RS22360 - nucleoside deaminase, at 4,634,488 to 4,634,964
_RS22360
ABID97_RS22365: ABID97_RS22365 - oxidoreductase-like domain-containing protein, at 4,634,971 to 4,635,195
_RS22365
ABID97_RS22370: ABID97_RS22370 - lipid A hydroxylase LpxO, at 4,635,239 to 4,636,135
_RS22370
Position (kb) 4633
4634
4635 Strain fitness (log2 ratio) -1
0
1 at 4632.780 kb on + strand at 4633.222 kb on + strand, within ABID97_RS22350 at 4633.223 kb on - strand, within ABID97_RS22350 at 4633.507 kb on + strand, within ABID97_RS22350 at 4633.588 kb on + strand, within ABID97_RS22350 at 4633.589 kb on - strand, within ABID97_RS22350 at 4633.987 kb on - strand, within ABID97_RS22355 at 4633.987 kb on - strand, within ABID97_RS22355 at 4634.232 kb on + strand, within ABID97_RS22355 at 4634.233 kb on - strand, within ABID97_RS22355 at 4634.233 kb on - strand, within ABID97_RS22355 at 4634.323 kb on - strand, within ABID97_RS22355 at 4634.409 kb on + strand at 4634.409 kb on + strand at 4634.409 kb on + strand at 4634.692 kb on + strand, within ABID97_RS22360 at 4634.692 kb on + strand, within ABID97_RS22360 at 4634.755 kb on + strand, within ABID97_RS22360 at 4634.756 kb on - strand, within ABID97_RS22360 at 4634.756 kb on - strand, within ABID97_RS22360 at 4635.241 kb on - strand at 4635.291 kb on + strand at 4635.295 kb on - strand at 4635.346 kb on - strand, within ABID97_RS22370 at 4635.346 kb on - strand, within ABID97_RS22370 at 4635.346 kb on - strand, within ABID97_RS22370 at 4635.351 kb on + strand, within ABID97_RS22370 at 4635.352 kb on - strand, within ABID97_RS22370 at 4635.352 kb on - strand, within ABID97_RS22370 at 4635.463 kb on - strand, within ABID97_RS22370
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,632,780 + +0.1 4,633,222 + ABID97_RS22350 0.45 -1.1 4,633,223 - ABID97_RS22350 0.45 +1.6 4,633,507 + ABID97_RS22350 0.78 -0.2 4,633,588 + ABID97_RS22350 0.87 +0.0 4,633,589 - ABID97_RS22350 0.87 +0.2 4,633,987 - ABID97_RS22355 0.36 +0.0 4,633,987 - ABID97_RS22355 0.36 +0.7 4,634,232 + ABID97_RS22355 0.68 -0.1 4,634,233 - ABID97_RS22355 0.68 +0.1 4,634,233 - ABID97_RS22355 0.68 -0.1 4,634,323 - ABID97_RS22355 0.80 -0.5 4,634,409 + +0.3 4,634,409 + -0.0 4,634,409 + +0.4 4,634,692 + ABID97_RS22360 0.43 +1.0 4,634,692 + ABID97_RS22360 0.43 +0.9 4,634,755 + ABID97_RS22360 0.56 +0.7 4,634,756 - ABID97_RS22360 0.56 -0.6 4,634,756 - ABID97_RS22360 0.56 -0.2 4,635,241 - -0.4 4,635,291 + +0.8 4,635,295 - +1.0 4,635,346 - ABID97_RS22370 0.12 -0.4 4,635,346 - ABID97_RS22370 0.12 -0.3 4,635,346 - ABID97_RS22370 0.12 -0.1 4,635,351 + ABID97_RS22370 0.12 -0.3 4,635,352 - ABID97_RS22370 0.13 -0.2 4,635,352 - ABID97_RS22370 0.13 +0.2 4,635,463 - ABID97_RS22370 0.25 -0.5
Or see this region's nucleotide sequence