Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22055 and ABID97_RS22060 are separated by 97 nucleotides ABID97_RS22060 and ABID97_RS22065 overlap by 40 nucleotides
ABID97_RS22055: ABID97_RS22055 - LysR substrate-binding domain-containing protein, at 4,562,926 to 4,563,861
_RS22055
ABID97_RS22060: ABID97_RS22060 - MFS transporter, at 4,563,959 to 4,565,254
_RS22060
ABID97_RS22065: ABID97_RS22065 - adenosine deaminase, at 4,565,215 to 4,566,279
_RS22065
Position (kb) 4563
4564
4565
4566 Strain fitness (log2 ratio) -1
0
1
2 at 4563.647 kb on + strand, within ABID97_RS22055 at 4563.648 kb on - strand, within ABID97_RS22055 at 4565.007 kb on - strand, within ABID97_RS22060 at 4565.253 kb on - strand at 4565.373 kb on - strand, within ABID97_RS22065 at 4565.612 kb on + strand, within ABID97_RS22065 at 4565.612 kb on + strand, within ABID97_RS22065 at 4565.996 kb on + strand, within ABID97_RS22065 at 4565.997 kb on - strand, within ABID97_RS22065 at 4566.035 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.038 kb on + strand, within ABID97_RS22065 at 4566.039 kb on - strand, within ABID97_RS22065 at 4566.039 kb on - strand, within ABID97_RS22065 at 4566.039 kb on - strand at 4566.039 kb on - strand, within ABID97_RS22065 at 4566.074 kb on + strand, within ABID97_RS22065 at 4566.074 kb on + strand, within ABID97_RS22065 at 4566.075 kb on - strand, within ABID97_RS22065 at 4566.105 kb on - strand, within ABID97_RS22065
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,563,647 + ABID97_RS22055 0.77 +0.2 4,563,648 - ABID97_RS22055 0.77 +1.2 4,565,007 - ABID97_RS22060 0.81 -1.0 4,565,253 - +0.4 4,565,373 - ABID97_RS22065 0.15 +0.2 4,565,612 + ABID97_RS22065 0.37 -0.1 4,565,612 + ABID97_RS22065 0.37 -1.0 4,565,996 + ABID97_RS22065 0.73 +0.1 4,565,997 - ABID97_RS22065 0.73 -0.1 4,566,035 + ABID97_RS22065 0.77 -0.4 4,566,038 + ABID97_RS22065 0.77 +0.6 4,566,038 + ABID97_RS22065 0.77 +0.1 4,566,038 + ABID97_RS22065 0.77 -0.4 4,566,038 + ABID97_RS22065 0.77 +0.6 4,566,038 + ABID97_RS22065 0.77 -0.1 4,566,038 + ABID97_RS22065 0.77 +0.9 4,566,038 + ABID97_RS22065 0.77 +0.0 4,566,039 - ABID97_RS22065 0.77 +0.8 4,566,039 - ABID97_RS22065 0.77 -0.2 4,566,039 - +2.3 4,566,039 - ABID97_RS22065 0.77 -0.8 4,566,074 + ABID97_RS22065 0.81 -0.7 4,566,074 + ABID97_RS22065 0.81 +0.2 4,566,075 - ABID97_RS22065 0.81 +0.7 4,566,105 - ABID97_RS22065 0.84 -0.7
Or see this region's nucleotide sequence