Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21900 and ABID97_RS21905 are separated by 8 nucleotides ABID97_RS21905 and ABID97_RS21910 are separated by 24 nucleotides ABID97_RS21910 and ABID97_RS21915 are separated by 253 nucleotides ABID97_RS21915 and ABID97_RS21920 are separated by 36 nucleotides
ABID97_RS21900: ABID97_RS21900 - LysR family transcriptional regulator, at 4,529,921 to 4,530,934
_RS21900
ABID97_RS21905: ABID97_RS21905 - GNAT family N-acetyltransferase, at 4,530,943 to 4,531,413
_RS21905
ABID97_RS21910: ABID97_RS21910 - hypothetical protein, at 4,531,438 to 4,531,782
_RS21910
ABID97_RS21915: ABID97_RS21915 - hypothetical protein, at 4,532,036 to 4,532,182
_RS21915
ABID97_RS21920: ABID97_RS21920 - autotransporter outer membrane beta-barrel domain-containing protein, at 4,532,219 to 4,535,470
_RS21920
Position (kb) 4530
4531
4532 Strain fitness (log2 ratio) -1
0
1
2 at 4530.026 kb on + strand, within ABID97_RS21900 at 4530.027 kb on - strand, within ABID97_RS21900 at 4530.272 kb on + strand, within ABID97_RS21900 at 4530.272 kb on + strand, within ABID97_RS21900 at 4530.284 kb on + strand, within ABID97_RS21900 at 4530.285 kb on - strand, within ABID97_RS21900 at 4530.285 kb on - strand, within ABID97_RS21900 at 4530.629 kb on + strand, within ABID97_RS21900 at 4530.901 kb on + strand at 4530.901 kb on + strand at 4530.901 kb on + strand at 4530.902 kb on - strand at 4531.024 kb on + strand, within ABID97_RS21905 at 4531.024 kb on + strand, within ABID97_RS21905 at 4531.024 kb on + strand, within ABID97_RS21905 at 4531.025 kb on - strand, within ABID97_RS21905 at 4531.025 kb on - strand, within ABID97_RS21905 at 4531.037 kb on - strand, within ABID97_RS21905 at 4531.109 kb on - strand, within ABID97_RS21905 at 4531.210 kb on + strand, within ABID97_RS21905 at 4531.280 kb on + strand, within ABID97_RS21905 at 4531.280 kb on + strand, within ABID97_RS21905 at 4531.280 kb on + strand, within ABID97_RS21905 at 4531.319 kb on - strand, within ABID97_RS21905 at 4531.360 kb on + strand, within ABID97_RS21905 at 4531.361 kb on - strand, within ABID97_RS21905 at 4531.397 kb on - strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.405 kb on + strand at 4531.406 kb on - strand at 4531.406 kb on - strand at 4531.442 kb on + strand at 4531.442 kb on + strand at 4531.443 kb on - strand at 4531.580 kb on + strand, within ABID97_RS21910 at 4531.580 kb on + strand, within ABID97_RS21910 at 4531.580 kb on + strand, within ABID97_RS21910 at 4531.580 kb on + strand, within ABID97_RS21910 at 4531.581 kb on - strand, within ABID97_RS21910 at 4531.632 kb on - strand, within ABID97_RS21910 at 4531.632 kb on - strand, within ABID97_RS21910 at 4531.632 kb on - strand, within ABID97_RS21910 at 4531.671 kb on - strand, within ABID97_RS21910 at 4531.671 kb on - strand, within ABID97_RS21910 at 4531.955 kb on + strand at 4531.956 kb on - strand at 4531.956 kb on - strand at 4532.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,530,026 + ABID97_RS21900 0.10 +0.2 4,530,027 - ABID97_RS21900 0.10 -1.4 4,530,272 + ABID97_RS21900 0.35 -0.1 4,530,272 + ABID97_RS21900 0.35 -0.2 4,530,284 + ABID97_RS21900 0.36 -0.2 4,530,285 - ABID97_RS21900 0.36 +0.8 4,530,285 - ABID97_RS21900 0.36 -1.2 4,530,629 + ABID97_RS21900 0.70 -0.4 4,530,901 + +0.0 4,530,901 + -0.2 4,530,901 + -1.7 4,530,902 - +0.0 4,531,024 + ABID97_RS21905 0.17 -1.2 4,531,024 + ABID97_RS21905 0.17 +0.3 4,531,024 + ABID97_RS21905 0.17 -0.5 4,531,025 - ABID97_RS21905 0.17 -0.5 4,531,025 - ABID97_RS21905 0.17 -0.3 4,531,037 - ABID97_RS21905 0.20 -0.8 4,531,109 - ABID97_RS21905 0.35 -0.4 4,531,210 + ABID97_RS21905 0.57 +0.1 4,531,280 + ABID97_RS21905 0.72 -0.9 4,531,280 + ABID97_RS21905 0.72 -0.1 4,531,280 + ABID97_RS21905 0.72 -0.3 4,531,319 - ABID97_RS21905 0.80 +1.3 4,531,360 + ABID97_RS21905 0.89 -1.2 4,531,361 - ABID97_RS21905 0.89 +0.2 4,531,397 - -0.6 4,531,405 + +0.5 4,531,405 + -0.4 4,531,405 + -0.9 4,531,405 + -0.3 4,531,405 + +0.2 4,531,405 + -0.4 4,531,405 + -0.2 4,531,405 + +0.1 4,531,406 - +0.9 4,531,406 - +0.2 4,531,442 + +0.1 4,531,442 + -0.4 4,531,443 - -0.5 4,531,580 + ABID97_RS21910 0.41 +1.9 4,531,580 + ABID97_RS21910 0.41 +0.9 4,531,580 + ABID97_RS21910 0.41 -0.5 4,531,580 + ABID97_RS21910 0.41 -1.0 4,531,581 - ABID97_RS21910 0.41 -1.0 4,531,632 - ABID97_RS21910 0.56 -0.7 4,531,632 - ABID97_RS21910 0.56 -0.8 4,531,632 - ABID97_RS21910 0.56 -0.6 4,531,671 - ABID97_RS21910 0.68 -0.2 4,531,671 - ABID97_RS21910 0.68 -1.1 4,531,955 + +1.1 4,531,956 - -0.1 4,531,956 - +0.3 4,532,229 + +0.6
Or see this region's nucleotide sequence