Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21715 and ABID97_RS21720 are separated by 16 nucleotides ABID97_RS21720 and ABID97_RS21725 are separated by 44 nucleotides ABID97_RS21725 and ABID97_RS21730 are separated by 128 nucleotides
ABID97_RS21715: ABID97_RS21715 - alpha/beta hydrolase, at 4,489,405 to 4,490,334
_RS21715
ABID97_RS21720: ABID97_RS21720 - amino acid racemase, at 4,490,351 to 4,491,058
_RS21720
ABID97_RS21725: ABID97_RS21725 - aldo/keto reductase, at 4,491,103 to 4,492,116
_RS21725
ABID97_RS21730: ABID97_RS21730 - LysR substrate-binding domain-containing protein, at 4,492,245 to 4,493,144
_RS21730
Position (kb) 4491
4492
4493 Strain fitness (log2 ratio) -1
0
1 at 4490.119 kb on + strand, within ABID97_RS21715 at 4490.119 kb on + strand, within ABID97_RS21715 at 4490.625 kb on + strand, within ABID97_RS21720 at 4490.626 kb on - strand, within ABID97_RS21720 at 4490.626 kb on - strand, within ABID97_RS21720 at 4490.658 kb on + strand, within ABID97_RS21720 at 4490.659 kb on - strand, within ABID97_RS21720 at 4490.901 kb on + strand, within ABID97_RS21720 at 4490.902 kb on - strand, within ABID97_RS21720 at 4490.902 kb on - strand, within ABID97_RS21720 at 4490.916 kb on + strand, within ABID97_RS21720 at 4490.917 kb on - strand, within ABID97_RS21720 at 4490.917 kb on - strand, within ABID97_RS21720 at 4491.068 kb on + strand at 4491.069 kb on - strand at 4491.500 kb on + strand, within ABID97_RS21725 at 4491.501 kb on - strand, within ABID97_RS21725 at 4491.575 kb on + strand, within ABID97_RS21725 at 4491.576 kb on - strand, within ABID97_RS21725 at 4491.697 kb on + strand, within ABID97_RS21725 at 4491.697 kb on + strand, within ABID97_RS21725 at 4491.697 kb on + strand, within ABID97_RS21725 at 4491.697 kb on + strand, within ABID97_RS21725 at 4491.697 kb on + strand, within ABID97_RS21725 at 4491.698 kb on - strand, within ABID97_RS21725 at 4491.699 kb on - strand, within ABID97_RS21725 at 4491.743 kb on + strand, within ABID97_RS21725 at 4491.743 kb on + strand, within ABID97_RS21725 at 4491.744 kb on - strand, within ABID97_RS21725 at 4491.756 kb on - strand, within ABID97_RS21725 at 4491.782 kb on + strand, within ABID97_RS21725 at 4491.782 kb on + strand, within ABID97_RS21725 at 4491.783 kb on - strand, within ABID97_RS21725 at 4491.911 kb on - strand, within ABID97_RS21725 at 4492.767 kb on + strand, within ABID97_RS21730 at 4492.971 kb on + strand, within ABID97_RS21730 at 4492.971 kb on + strand, within ABID97_RS21730 at 4492.971 kb on + strand, within ABID97_RS21730 at 4492.971 kb on + strand, within ABID97_RS21730 at 4492.972 kb on - strand, within ABID97_RS21730 at 4492.972 kb on - strand, within ABID97_RS21730 at 4492.972 kb on - strand, within ABID97_RS21730 at 4492.987 kb on - strand, within ABID97_RS21730 at 4493.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,490,119 + ABID97_RS21715 0.77 +0.1 4,490,119 + ABID97_RS21715 0.77 -0.4 4,490,625 + ABID97_RS21720 0.39 +0.3 4,490,626 - ABID97_RS21720 0.39 -0.1 4,490,626 - ABID97_RS21720 0.39 -0.3 4,490,658 + ABID97_RS21720 0.43 +0.4 4,490,659 - ABID97_RS21720 0.44 +0.0 4,490,901 + ABID97_RS21720 0.78 +0.6 4,490,902 - ABID97_RS21720 0.78 -0.5 4,490,902 - ABID97_RS21720 0.78 +0.3 4,490,916 + ABID97_RS21720 0.80 +0.1 4,490,917 - ABID97_RS21720 0.80 +0.1 4,490,917 - ABID97_RS21720 0.80 -0.2 4,491,068 + -0.1 4,491,069 - -0.4 4,491,500 + ABID97_RS21725 0.39 -0.3 4,491,501 - ABID97_RS21725 0.39 -0.0 4,491,575 + ABID97_RS21725 0.47 +0.0 4,491,576 - ABID97_RS21725 0.47 +0.1 4,491,697 + ABID97_RS21725 0.59 -0.1 4,491,697 + ABID97_RS21725 0.59 +0.2 4,491,697 + ABID97_RS21725 0.59 +0.2 4,491,697 + ABID97_RS21725 0.59 +0.4 4,491,697 + ABID97_RS21725 0.59 -1.6 4,491,698 - ABID97_RS21725 0.59 -0.1 4,491,699 - ABID97_RS21725 0.59 -0.3 4,491,743 + ABID97_RS21725 0.63 +0.1 4,491,743 + ABID97_RS21725 0.63 +0.5 4,491,744 - ABID97_RS21725 0.63 -0.5 4,491,756 - ABID97_RS21725 0.64 -0.2 4,491,782 + ABID97_RS21725 0.67 +0.2 4,491,782 + ABID97_RS21725 0.67 +0.3 4,491,783 - ABID97_RS21725 0.67 -0.3 4,491,911 - ABID97_RS21725 0.80 -0.3 4,492,767 + ABID97_RS21730 0.58 -0.7 4,492,971 + ABID97_RS21730 0.81 +0.5 4,492,971 + ABID97_RS21730 0.81 -0.6 4,492,971 + ABID97_RS21730 0.81 -0.4 4,492,971 + ABID97_RS21730 0.81 +0.6 4,492,972 - ABID97_RS21730 0.81 +0.4 4,492,972 - ABID97_RS21730 0.81 +0.4 4,492,972 - ABID97_RS21730 0.81 +1.0 4,492,987 - ABID97_RS21730 0.82 -0.8 4,493,068 - -0.7
Or see this region's nucleotide sequence