Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20515 and ABID97_RS20520 are separated by 94 nucleotides ABID97_RS20520 and ABID97_RS20525 are separated by 217 nucleotides ABID97_RS20525 and ABID97_RS20530 are separated by 114 nucleotides
ABID97_RS20515: ABID97_RS20515 - NAD(P)H-quinone oxidoreductase, at 4,233,040 to 4,234,038
_RS20515
ABID97_RS20520: ABID97_RS20520 - polyribonucleotide nucleotidyltransferase, at 4,234,133 to 4,236,457
_RS20520
ABID97_RS20525: ABID97_RS20525 - 30S ribosomal protein S15, at 4,236,675 to 4,236,941
_RS20525
ABID97_RS20530: ABID97_RS20530 - pyridoxal phosphate-dependent aminotransferase, at 4,237,056 to 4,238,213
_RS20530
Position (kb) 4234
4235
4236
4237 Strain fitness (log2 ratio) -1
0
1 at 4233.459 kb on - strand, within ABID97_RS20515 at 4234.159 kb on - strand at 4234.579 kb on - strand, within ABID97_RS20520 at 4234.579 kb on - strand, within ABID97_RS20520 at 4236.646 kb on - strand at 4237.057 kb on + strand at 4237.258 kb on + strand, within ABID97_RS20530 at 4237.258 kb on + strand, within ABID97_RS20530 at 4237.258 kb on + strand, within ABID97_RS20530 at 4237.259 kb on - strand, within ABID97_RS20530
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 4,233,459 - ABID97_RS20515 0.42 +0.2 4,234,159 - +0.0 4,234,579 - ABID97_RS20520 0.19 +1.1 4,234,579 - ABID97_RS20520 0.19 +0.5 4,236,646 - -0.9 4,237,057 + -0.1 4,237,258 + ABID97_RS20530 0.17 -0.2 4,237,258 + ABID97_RS20530 0.17 -0.6 4,237,258 + ABID97_RS20530 0.17 -0.1 4,237,259 - ABID97_RS20530 0.18 -0.5
Or see this region's nucleotide sequence