Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20360

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20355 and ABID97_RS20360 overlap by 1 nucleotidesABID97_RS20360 and ABID97_RS20365 are separated by 30 nucleotides ABID97_RS20355: ABID97_RS20355 - PLP-dependent cysteine synthase family protein, at 4,201,551 to 4,202,612 _RS20355 ABID97_RS20360: ABID97_RS20360 - carotenoid 1,2-hydratase, at 4,202,612 to 4,203,688 _RS20360 ABID97_RS20365: ABID97_RS20365 - branched-chain amino acid ABC transporter permease, at 4,203,719 to 4,204,708 _RS20365 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4201.681 kb on - strand, within ABID97_RS20355at 4201.750 kb on - strand, within ABID97_RS20355at 4201.830 kb on + strand, within ABID97_RS20355at 4201.831 kb on - strand, within ABID97_RS20355at 4201.914 kb on + strand, within ABID97_RS20355at 4201.915 kb on - strand, within ABID97_RS20355at 4201.956 kb on + strand, within ABID97_RS20355at 4201.999 kb on - strand, within ABID97_RS20355at 4202.530 kb on - strandat 4202.765 kb on + strand, within ABID97_RS20360at 4202.765 kb on + strand, within ABID97_RS20360at 4202.766 kb on - strand, within ABID97_RS20360at 4202.766 kb on - strand, within ABID97_RS20360at 4203.164 kb on + strand, within ABID97_RS20360at 4203.171 kb on - strand, within ABID97_RS20360at 4204.239 kb on + strand, within ABID97_RS20365at 4204.239 kb on + strand, within ABID97_RS20365at 4204.240 kb on - strand, within ABID97_RS20365at 4204.240 kb on - strand, within ABID97_RS20365at 4204.350 kb on + strand, within ABID97_RS20365at 4204.389 kb on + strand, within ABID97_RS20365at 4204.390 kb on - strand, within ABID97_RS20365at 4204.390 kb on - strand, within ABID97_RS20365

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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4,201,681 - ABID97_RS20355 0.12 +0.5
4,201,750 - ABID97_RS20355 0.19 -0.3
4,201,830 + ABID97_RS20355 0.26 -0.3
4,201,831 - ABID97_RS20355 0.26 +0.5
4,201,914 + ABID97_RS20355 0.34 +0.2
4,201,915 - ABID97_RS20355 0.34 +0.5
4,201,956 + ABID97_RS20355 0.38 -0.7
4,201,999 - ABID97_RS20355 0.42 +0.2
4,202,530 - +0.5
4,202,765 + ABID97_RS20360 0.14 +0.1
4,202,765 + ABID97_RS20360 0.14 -0.1
4,202,766 - ABID97_RS20360 0.14 -1.9
4,202,766 - ABID97_RS20360 0.14 +0.6
4,203,164 + ABID97_RS20360 0.51 -0.5
4,203,171 - ABID97_RS20360 0.52 +0.4
4,204,239 + ABID97_RS20365 0.53 +0.2
4,204,239 + ABID97_RS20365 0.53 +0.7
4,204,240 - ABID97_RS20365 0.53 -0.0
4,204,240 - ABID97_RS20365 0.53 +0.3
4,204,350 + ABID97_RS20365 0.64 -0.6
4,204,389 + ABID97_RS20365 0.68 -1.3
4,204,390 - ABID97_RS20365 0.68 +3.8
4,204,390 - ABID97_RS20365 0.68 -1.0

Or see this region's nucleotide sequence