Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20160

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS20150 and ABID97_RS20155 are separated by 14 nucleotidesABID97_RS20155 and ABID97_RS20160 are separated by 91 nucleotidesABID97_RS20160 and ABID97_RS20165 are separated by 159 nucleotidesABID97_RS20165 and ABID97_RS20170 are separated by 2 nucleotides ABID97_RS20150: ABID97_RS20150 - cupin domain-containing protein, at 4,163,596 to 4,164,738 _RS20150 ABID97_RS20155: ABID97_RS20155 - peptidylprolyl isomerase, at 4,164,753 to 4,165,277 _RS20155 ABID97_RS20160: ABID97_RS20160 - glycine zipper 2TM domain-containing protein, at 4,165,369 to 4,165,869 _RS20160 ABID97_RS20165: ABID97_RS20165 - dUTP diphosphatase, at 4,166,029 to 4,166,475 _RS20165 ABID97_RS20170: ABID97_RS20170 - hypothetical protein, at 4,166,478 to 4,166,927 _RS20170 Position (kb) 4165 4166Strain fitness (log2 ratio) -1 0 1at 4164.371 kb on + strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.371 kb on + strand, within ABID97_RS20150at 4164.372 kb on - strand, within ABID97_RS20150at 4164.729 kb on + strandat 4164.729 kb on + strandat 4164.730 kb on - strandat 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.083 kb on + strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.084 kb on - strand, within ABID97_RS20155at 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.370 kb on + strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.488 kb on - strand, within ABID97_RS20160at 4165.488 kb on - strand, within ABID97_RS20160at 4165.718 kb on + strand, within ABID97_RS20160at 4165.718 kb on + strand, within ABID97_RS20160at 4165.718 kb on + strand, within ABID97_RS20160at 4165.719 kb on - strand, within ABID97_RS20160at 4165.719 kb on - strand, within ABID97_RS20160at 4165.733 kb on + strand, within ABID97_RS20160at 4165.782 kb on - strand, within ABID97_RS20160at 4166.014 kb on + strandat 4166.479 kb on + strandat 4166.479 kb on + strandat 4166.479 kb on + strandat 4166.479 kb on + strandat 4166.649 kb on + strand, within ABID97_RS20170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
4,164,371 + ABID97_RS20150 0.68 -0.3
4,164,371 + ABID97_RS20150 0.68 -0.1
4,164,371 + ABID97_RS20150 0.68 +0.5
4,164,372 - ABID97_RS20150 0.68 +0.7
4,164,729 + +0.5
4,164,729 + -0.7
4,164,730 - +0.6
4,165,083 + ABID97_RS20155 0.63 +0.7
4,165,083 + ABID97_RS20155 0.63 -0.6
4,165,083 + ABID97_RS20155 0.63 +1.6
4,165,083 + ABID97_RS20155 0.63 -0.6
4,165,083 + ABID97_RS20155 0.63 -0.8
4,165,083 + ABID97_RS20155 0.63 -0.0
4,165,084 - ABID97_RS20155 0.63 -0.2
4,165,084 - ABID97_RS20155 0.63 -1.0
4,165,084 - ABID97_RS20155 0.63 -0.9
4,165,084 - ABID97_RS20155 0.63 +0.6
4,165,084 - ABID97_RS20155 0.63 +0.1
4,165,370 + -0.2
4,165,370 + +1.1
4,165,370 + +0.1
4,165,370 + +1.4
4,165,370 + +0.1
4,165,370 + +0.1
4,165,370 + +1.0
4,165,371 - -0.1
4,165,371 - -0.9
4,165,371 - +0.7
4,165,371 - -0.0
4,165,488 - ABID97_RS20160 0.24 -0.1
4,165,488 - ABID97_RS20160 0.24 -0.8
4,165,718 + ABID97_RS20160 0.70 -0.9
4,165,718 + ABID97_RS20160 0.70 -0.7
4,165,718 + ABID97_RS20160 0.70 +0.3
4,165,719 - ABID97_RS20160 0.70 +1.1
4,165,719 - ABID97_RS20160 0.70 -0.4
4,165,733 + ABID97_RS20160 0.73 -0.2
4,165,782 - ABID97_RS20160 0.82 +0.6
4,166,014 + -0.1
4,166,479 + -0.3
4,166,479 + +0.9
4,166,479 + +0.4
4,166,479 + +0.2
4,166,649 + ABID97_RS20170 0.38 -0.0

Or see this region's nucleotide sequence