Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18635 and ABID97_RS18640 are separated by 51 nucleotides ABID97_RS18640 and ABID97_RS18645 are separated by 2 nucleotides ABID97_RS18645 and ABID97_RS18650 are separated by 162 nucleotides ABID97_RS18650 and ABID97_RS18655 are separated by 166 nucleotides
ABID97_RS18635: ABID97_RS18635 - enoyl-CoA hydratase-related protein, at 3,841,571 to 3,842,410
_RS18635
ABID97_RS18640: ABID97_RS18640 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 3,842,462 to 3,842,947
_RS18640
ABID97_RS18645: ABID97_RS18645 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,842,950 to 3,844,239
_RS18645
ABID97_RS18650: ABID97_RS18650 - 2Fe-2S iron-sulfur cluster-binding protein, at 3,844,402 to 3,844,722
_RS18650
ABID97_RS18655: ABID97_RS18655 - LysR family transcriptional regulator, at 3,844,889 to 3,845,839
_RS18655
Position (kb) 3842
3843
3844
3845 Strain fitness (log2 ratio) -1
0
1 at 3842.103 kb on + strand, within ABID97_RS18635 at 3842.898 kb on + strand, within ABID97_RS18640 at 3843.933 kb on + strand, within ABID97_RS18645 at 3843.934 kb on - strand, within ABID97_RS18645 at 3844.139 kb on + strand at 3844.140 kb on - strand at 3844.391 kb on + strand at 3844.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,842,103 + ABID97_RS18635 0.63 -0.3 3,842,898 + ABID97_RS18640 0.90 +0.1 3,843,933 + ABID97_RS18645 0.76 +0.1 3,843,934 - ABID97_RS18645 0.76 +0.0 3,844,139 + +0.2 3,844,140 - -0.5 3,844,391 + -0.2 3,844,772 - -0.3
Or see this region's nucleotide sequence