Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18615 and ABID97_RS18620 are separated by 3 nucleotides ABID97_RS18620 and ABID97_RS18625 are separated by 2 nucleotides ABID97_RS18625 and ABID97_RS18630 overlap by 4 nucleotides
ABID97_RS18615: ABID97_RS18615 - acetyl-CoA acetyltransferase, at 3,837,227 to 3,838,429
_RS18615
ABID97_RS18620: ABID97_RS18620 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 3,838,433 to 3,839,908
_RS18620
ABID97_RS18625: ABID97_RS18625 - alpha/beta hydrolase, at 3,839,911 to 3,840,849
_RS18625
ABID97_RS18630: ABID97_RS18630 - SDR family oxidoreductase, at 3,840,846 to 3,841,574
_RS18630
Position (kb) 3838
3839
3840 Strain fitness (log2 ratio) -1
0
1 at 3837.640 kb on - strand, within ABID97_RS18615 at 3837.640 kb on - strand, within ABID97_RS18615 at 3837.967 kb on - strand, within ABID97_RS18615 at 3838.327 kb on - strand at 3839.537 kb on + strand, within ABID97_RS18620 at 3839.538 kb on - strand, within ABID97_RS18620 at 3840.512 kb on + strand, within ABID97_RS18625 at 3840.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,837,640 - ABID97_RS18615 0.34 -0.7 3,837,640 - ABID97_RS18615 0.34 -1.2 3,837,967 - ABID97_RS18615 0.62 -0.3 3,838,327 - -0.5 3,839,537 + ABID97_RS18620 0.75 -0.5 3,839,538 - ABID97_RS18620 0.75 -1.5 3,840,512 + ABID97_RS18625 0.64 +0.2 3,840,800 - +0.5
Or see this region's nucleotide sequence