Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18495

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18490 and ABID97_RS18495 overlap by 4 nucleotidesABID97_RS18495 and ABID97_RS18500 overlap by 4 nucleotides ABID97_RS18490: ABID97_RS18490 - enoyl-CoA hydratase-related protein, at 3,811,467 to 3,812,282 _RS18490 ABID97_RS18495: ABID97_RS18495 - DUF2889 domain-containing protein, at 3,812,279 to 3,812,836 _RS18495 ABID97_RS18500: ABID97_RS18500 - CaiB/BaiF CoA-transferase family protein, at 3,812,833 to 3,814,005 _RS18500 Position (kb) 3812 3813Strain fitness (log2 ratio) -1 0 1at 3811.469 kb on - strandat 3811.712 kb on + strand, within ABID97_RS18490at 3812.033 kb on - strand, within ABID97_RS18490at 3812.556 kb on + strand, within ABID97_RS18495at 3812.857 kb on + strandat 3812.858 kb on - strandat 3813.281 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.302 kb on + strand, within ABID97_RS18500at 3813.594 kb on - strand, within ABID97_RS18500at 3813.594 kb on - strand, within ABID97_RS18500at 3813.689 kb on - strand, within ABID97_RS18500

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,811,469 - +0.7
3,811,712 + ABID97_RS18490 0.30 -0.3
3,812,033 - ABID97_RS18490 0.69 -0.6
3,812,556 + ABID97_RS18495 0.50 -0.4
3,812,857 + -0.4
3,812,858 - -1.0
3,813,281 + ABID97_RS18500 0.38 +1.5
3,813,302 + ABID97_RS18500 0.40 -0.8
3,813,302 + ABID97_RS18500 0.40 -0.2
3,813,302 + ABID97_RS18500 0.40 -0.2
3,813,594 - ABID97_RS18500 0.65 +0.5
3,813,594 - ABID97_RS18500 0.65 -0.3
3,813,689 - ABID97_RS18500 0.73 -0.3

Or see this region's nucleotide sequence