Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16345 and ABID97_RS16350 are separated by 135 nucleotides ABID97_RS16350 and ABID97_RS16355 overlap by 4 nucleotides ABID97_RS16355 and ABID97_RS16360 are separated by 62 nucleotides
ABID97_RS16345: ABID97_RS16345 - heme-binding protein, at 3,384,075 to 3,384,578
_RS16345
ABID97_RS16350: ABID97_RS16350 - response regulator, at 3,384,714 to 3,385,352
_RS16350
ABID97_RS16355: ABID97_RS16355 - ATP-binding protein, at 3,385,349 to 3,386,843
_RS16355
ABID97_RS16360: ABID97_RS16360 - DUF72 domain-containing protein, at 3,386,906 to 3,388,036
_RS16360
Position (kb)
3385
3386
3387 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3384.642 kb on + strand at 3384.678 kb on - strand at 3384.678 kb on - strand at 3384.700 kb on - strand at 3384.700 kb on - strand at 3384.700 kb on - strand at 3385.284 kb on + strand, within ABID97_RS16350 at 3385.681 kb on - strand, within ABID97_RS16355 at 3386.416 kb on + strand, within ABID97_RS16355 at 3386.417 kb on - strand, within ABID97_RS16355 at 3386.597 kb on - strand, within ABID97_RS16355 at 3386.677 kb on + strand, within ABID97_RS16355 at 3386.678 kb on - strand, within ABID97_RS16355 at 3386.678 kb on - strand, within ABID97_RS16355 at 3386.742 kb on + strand at 3386.742 kb on + strand at 3386.743 kb on - strand at 3386.743 kb on - strand at 3386.743 kb on - strand at 3387.147 kb on - strand, within ABID97_RS16360 at 3387.270 kb on - strand, within ABID97_RS16360 at 3387.294 kb on - strand, within ABID97_RS16360
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 3,384,642 + -1.4 3,384,678 - -0.9 3,384,678 - +0.3 3,384,700 - +0.5 3,384,700 - +0.2 3,384,700 - -2.1 3,385,284 + ABID97_RS16350 0.89 -1.6 3,385,681 - ABID97_RS16355 0.22 +1.0 3,386,416 + ABID97_RS16355 0.71 -0.0 3,386,417 - ABID97_RS16355 0.71 +0.2 3,386,597 - ABID97_RS16355 0.83 +0.1 3,386,677 + ABID97_RS16355 0.89 +0.4 3,386,678 - ABID97_RS16355 0.89 +0.4 3,386,678 - ABID97_RS16355 0.89 -0.8 3,386,742 + -0.1 3,386,742 + -0.3 3,386,743 - +0.0 3,386,743 - +0.2 3,386,743 - +0.6 3,387,147 - ABID97_RS16360 0.21 +0.4 3,387,270 - ABID97_RS16360 0.32 +0.4 3,387,294 - ABID97_RS16360 0.34 +2.3
Or see this region's nucleotide sequence