Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16355

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16345 and ABID97_RS16350 are separated by 135 nucleotidesABID97_RS16350 and ABID97_RS16355 overlap by 4 nucleotidesABID97_RS16355 and ABID97_RS16360 are separated by 62 nucleotides ABID97_RS16345: ABID97_RS16345 - heme-binding protein, at 3,384,075 to 3,384,578 _RS16345 ABID97_RS16350: ABID97_RS16350 - response regulator, at 3,384,714 to 3,385,352 _RS16350 ABID97_RS16355: ABID97_RS16355 - ATP-binding protein, at 3,385,349 to 3,386,843 _RS16355 ABID97_RS16360: ABID97_RS16360 - DUF72 domain-containing protein, at 3,386,906 to 3,388,036 _RS16360 Position (kb) 3385 3386 3387Strain fitness (log2 ratio) -2 -1 0 1 2at 3384.642 kb on + strandat 3384.678 kb on - strandat 3384.678 kb on - strandat 3384.700 kb on - strandat 3384.700 kb on - strandat 3384.700 kb on - strandat 3385.284 kb on + strand, within ABID97_RS16350at 3385.681 kb on - strand, within ABID97_RS16355at 3386.416 kb on + strand, within ABID97_RS16355at 3386.417 kb on - strand, within ABID97_RS16355at 3386.597 kb on - strand, within ABID97_RS16355at 3386.677 kb on + strand, within ABID97_RS16355at 3386.678 kb on - strand, within ABID97_RS16355at 3386.678 kb on - strand, within ABID97_RS16355at 3386.742 kb on + strandat 3386.742 kb on + strandat 3386.743 kb on - strandat 3386.743 kb on - strandat 3386.743 kb on - strandat 3387.147 kb on - strand, within ABID97_RS16360at 3387.270 kb on - strand, within ABID97_RS16360at 3387.294 kb on - strand, within ABID97_RS16360

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,384,642 + -1.4
3,384,678 - -0.9
3,384,678 - +0.3
3,384,700 - +0.5
3,384,700 - +0.2
3,384,700 - -2.1
3,385,284 + ABID97_RS16350 0.89 -1.6
3,385,681 - ABID97_RS16355 0.22 +1.0
3,386,416 + ABID97_RS16355 0.71 -0.0
3,386,417 - ABID97_RS16355 0.71 +0.2
3,386,597 - ABID97_RS16355 0.83 +0.1
3,386,677 + ABID97_RS16355 0.89 +0.4
3,386,678 - ABID97_RS16355 0.89 +0.4
3,386,678 - ABID97_RS16355 0.89 -0.8
3,386,742 + -0.1
3,386,742 + -0.3
3,386,743 - +0.0
3,386,743 - +0.2
3,386,743 - +0.6
3,387,147 - ABID97_RS16360 0.21 +0.4
3,387,270 - ABID97_RS16360 0.32 +0.4
3,387,294 - ABID97_RS16360 0.34 +2.3

Or see this region's nucleotide sequence