Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15495

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15490 and ABID97_RS15495 are separated by 8 nucleotidesABID97_RS15495 and ABID97_RS15500 are separated by 11 nucleotidesABID97_RS15500 and ABID97_RS15505 overlap by 4 nucleotides ABID97_RS15490: ABID97_RS15490 - FMNH2-dependent alkanesulfonate monooxygenase, at 3,204,179 to 3,205,348 _RS15490 ABID97_RS15495: ABID97_RS15495 - aliphatic sulfonate ABC transporter permease SsuC, at 3,205,357 to 3,206,205 _RS15495 ABID97_RS15500: ABID97_RS15500 - aliphatic sulfonate ABC transporter substrate-binding protein, at 3,206,217 to 3,207,194 _RS15500 ABID97_RS15505: ABID97_RS15505 - ATP-binding cassette domain-containing protein, at 3,207,191 to 3,208,021 _RS15505 Position (kb) 3205 3206 3207Strain fitness (log2 ratio) -2 -1 0 1at 3204.537 kb on - strand, within ABID97_RS15490at 3204.558 kb on - strand, within ABID97_RS15490at 3204.674 kb on + strand, within ABID97_RS15490at 3204.764 kb on + strand, within ABID97_RS15490at 3204.765 kb on - strand, within ABID97_RS15490at 3204.765 kb on - strand, within ABID97_RS15490at 3204.765 kb on - strand, within ABID97_RS15490at 3205.370 kb on + strandat 3205.371 kb on - strandat 3205.838 kb on - strand, within ABID97_RS15495at 3205.900 kb on + strand, within ABID97_RS15495at 3206.222 kb on + strandat 3206.222 kb on + strandat 3206.223 kb on - strandat 3206.667 kb on + strand, within ABID97_RS15500at 3206.668 kb on - strand, within ABID97_RS15500at 3206.874 kb on + strand, within ABID97_RS15500at 3206.875 kb on - strand, within ABID97_RS15500at 3206.878 kb on - strand, within ABID97_RS15500at 3206.878 kb on - strand, within ABID97_RS15500at 3206.878 kb on - strand, within ABID97_RS15500at 3206.932 kb on - strand, within ABID97_RS15500at 3207.055 kb on - strand, within ABID97_RS15500at 3207.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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3,204,537 - ABID97_RS15490 0.31 -1.1
3,204,558 - ABID97_RS15490 0.32 +0.3
3,204,674 + ABID97_RS15490 0.42 -0.4
3,204,764 + ABID97_RS15490 0.50 -0.6
3,204,765 - ABID97_RS15490 0.50 -2.0
3,204,765 - ABID97_RS15490 0.50 -1.0
3,204,765 - ABID97_RS15490 0.50 +0.6
3,205,370 + -0.3
3,205,371 - +0.1
3,205,838 - ABID97_RS15495 0.57 -1.0
3,205,900 + ABID97_RS15495 0.64 -1.1
3,206,222 + -1.7
3,206,222 + -0.7
3,206,223 - -1.5
3,206,667 + ABID97_RS15500 0.46 -1.1
3,206,668 - ABID97_RS15500 0.46 -0.3
3,206,874 + ABID97_RS15500 0.67 +0.5
3,206,875 - ABID97_RS15500 0.67 -1.5
3,206,878 - ABID97_RS15500 0.68 -1.1
3,206,878 - ABID97_RS15500 0.68 +0.2
3,206,878 - ABID97_RS15500 0.68 -0.9
3,206,932 - ABID97_RS15500 0.73 -0.3
3,207,055 - ABID97_RS15500 0.86 +0.1
3,207,111 - -0.9

Or see this region's nucleotide sequence