Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13400 and ABID97_RS13405 are separated by 4 nucleotides ABID97_RS13405 and ABID97_RS13410 overlap by 4 nucleotides ABID97_RS13410 and ABID97_RS13415 are separated by 68 nucleotides
ABID97_RS13400: ABID97_RS13400 - cupin domain-containing protein, at 2,791,040 to 2,791,621
_RS13400
ABID97_RS13405: ABID97_RS13405 - fumarylacetoacetate hydrolase family protein, at 2,791,626 to 2,792,615
_RS13405
ABID97_RS13410: ABID97_RS13410 - NAD-dependent epimerase/dehydratase family protein, at 2,792,612 to 2,793,565
_RS13410
ABID97_RS13415: ABID97_RS13415 - PDR/VanB family oxidoreductase, at 2,793,634 to 2,794,584
_RS13415
Position (kb)
2792
2793
2794 Strain fitness (log2 ratio)
-1
0
1 at 2791.779 kb on + strand, within ABID97_RS13405 at 2791.779 kb on + strand, within ABID97_RS13405 at 2792.005 kb on + strand, within ABID97_RS13405 at 2792.880 kb on - strand, within ABID97_RS13410 at 2792.966 kb on + strand, within ABID97_RS13410 at 2792.988 kb on - strand, within ABID97_RS13410 at 2793.001 kb on - strand, within ABID97_RS13410 at 2793.047 kb on + strand, within ABID97_RS13410 at 2793.047 kb on + strand, within ABID97_RS13410 at 2793.048 kb on - strand, within ABID97_RS13410 at 2793.221 kb on + strand, within ABID97_RS13410 at 2793.567 kb on - strand at 2794.022 kb on + strand, within ABID97_RS13415 at 2794.140 kb on - strand, within ABID97_RS13415
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,791,779 + ABID97_RS13405 0.15 -0.6 2,791,779 + ABID97_RS13405 0.15 -1.1 2,792,005 + ABID97_RS13405 0.38 -0.8 2,792,880 - ABID97_RS13410 0.28 +0.5 2,792,966 + ABID97_RS13410 0.37 -0.5 2,792,988 - ABID97_RS13410 0.39 +0.4 2,793,001 - ABID97_RS13410 0.41 +0.3 2,793,047 + ABID97_RS13410 0.46 +0.8 2,793,047 + ABID97_RS13410 0.46 -0.1 2,793,048 - ABID97_RS13410 0.46 +0.7 2,793,221 + ABID97_RS13410 0.64 -0.2 2,793,567 - -1.1 2,794,022 + ABID97_RS13415 0.41 +0.6 2,794,140 - ABID97_RS13415 0.53 -0.4
Or see this region's nucleotide sequence