Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13410

Experiment: butyrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13400 and ABID97_RS13405 are separated by 4 nucleotidesABID97_RS13405 and ABID97_RS13410 overlap by 4 nucleotidesABID97_RS13410 and ABID97_RS13415 are separated by 68 nucleotides ABID97_RS13400: ABID97_RS13400 - cupin domain-containing protein, at 2,791,040 to 2,791,621 _RS13400 ABID97_RS13405: ABID97_RS13405 - fumarylacetoacetate hydrolase family protein, at 2,791,626 to 2,792,615 _RS13405 ABID97_RS13410: ABID97_RS13410 - NAD-dependent epimerase/dehydratase family protein, at 2,792,612 to 2,793,565 _RS13410 ABID97_RS13415: ABID97_RS13415 - PDR/VanB family oxidoreductase, at 2,793,634 to 2,794,584 _RS13415 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -1 0 1at 2791.779 kb on + strand, within ABID97_RS13405at 2791.779 kb on + strand, within ABID97_RS13405at 2792.005 kb on + strand, within ABID97_RS13405at 2792.880 kb on - strand, within ABID97_RS13410at 2792.966 kb on + strand, within ABID97_RS13410at 2792.988 kb on - strand, within ABID97_RS13410at 2793.001 kb on - strand, within ABID97_RS13410at 2793.047 kb on + strand, within ABID97_RS13410at 2793.047 kb on + strand, within ABID97_RS13410at 2793.048 kb on - strand, within ABID97_RS13410at 2793.221 kb on + strand, within ABID97_RS13410at 2793.567 kb on - strandat 2794.022 kb on + strand, within ABID97_RS13415at 2794.140 kb on - strand, within ABID97_RS13415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
remove
2,791,779 + ABID97_RS13405 0.15 -0.6
2,791,779 + ABID97_RS13405 0.15 -1.1
2,792,005 + ABID97_RS13405 0.38 -0.8
2,792,880 - ABID97_RS13410 0.28 +0.5
2,792,966 + ABID97_RS13410 0.37 -0.5
2,792,988 - ABID97_RS13410 0.39 +0.4
2,793,001 - ABID97_RS13410 0.41 +0.3
2,793,047 + ABID97_RS13410 0.46 +0.8
2,793,047 + ABID97_RS13410 0.46 -0.1
2,793,048 - ABID97_RS13410 0.46 +0.7
2,793,221 + ABID97_RS13410 0.64 -0.2
2,793,567 - -1.1
2,794,022 + ABID97_RS13415 0.41 +0.6
2,794,140 - ABID97_RS13415 0.53 -0.4

Or see this region's nucleotide sequence