Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12890

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12885 and ABID97_RS12890 overlap by 4 nucleotidesABID97_RS12890 and ABID97_RS12895 are separated by 43 nucleotides ABID97_RS12885: ABID97_RS12885 - transketolase, at 2,669,432 to 2,671,471 _RS12885 ABID97_RS12890: ABID97_RS12890 - phosphoglycerate kinase, at 2,671,468 to 2,672,649 _RS12890 ABID97_RS12895: ABID97_RS12895 - class II fructose-bisphosphate aldolase, at 2,672,693 to 2,673,706 _RS12895 Position (kb) 2671 2672 2673Strain fitness (log2 ratio) -1 0 1at 2670.669 kb on - strand, within ABID97_RS12885at 2671.071 kb on - strand, within ABID97_RS12885at 2671.308 kb on - strandat 2671.533 kb on + strandat 2673.050 kb on + strand, within ABID97_RS12895at 2673.050 kb on + strand, within ABID97_RS12895at 2673.458 kb on + strand, within ABID97_RS12895

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,670,669 - ABID97_RS12885 0.61 +0.5
2,671,071 - ABID97_RS12885 0.80 -0.7
2,671,308 - -0.3
2,671,533 + -0.7
2,673,050 + ABID97_RS12895 0.35 +0.2
2,673,050 + ABID97_RS12895 0.35 -0.1
2,673,458 + ABID97_RS12895 0.75 +0.8

Or see this region's nucleotide sequence