Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12610

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12605 and ABID97_RS12610 are separated by 133 nucleotidesABID97_RS12610 and ABID97_RS12615 overlap by 22 nucleotides ABID97_RS12605: ABID97_RS12605 - sigma-54-dependent Fis family transcriptional regulator, at 2,616,470 to 2,618,515 _RS12605 ABID97_RS12610: ABID97_RS12610 - flavoprotein, at 2,618,649 to 2,619,194 _RS12610 ABID97_RS12615: ABID97_RS12615 - DUF6513 domain-containing protein, at 2,619,173 to 2,620,657 _RS12615 Position (kb) 2618 2619 2620Strain fitness (log2 ratio) -1 0 1at 2618.850 kb on + strand, within ABID97_RS12610at 2619.971 kb on + strand, within ABID97_RS12615

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,618,850 + ABID97_RS12610 0.37 +0.0
2,619,971 + ABID97_RS12615 0.54 +0.4

Or see this region's nucleotide sequence