Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11760

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11750 and ABID97_RS11755 are separated by 55 nucleotidesABID97_RS11755 and ABID97_RS11760 are separated by 5 nucleotidesABID97_RS11760 and ABID97_RS11765 are separated by 230 nucleotides ABID97_RS11750: ABID97_RS11750 - trimeric intracellular cation channel family protein, at 2,429,261 to 2,429,878 _RS11750 ABID97_RS11755: ABID97_RS11755 - dihydrofolate reductase family protein, at 2,429,934 to 2,430,590 _RS11755 ABID97_RS11760: ABID97_RS11760 - hypothetical protein, at 2,430,596 to 2,430,871 _RS11760 ABID97_RS11765: ABID97_RS11765 - four-carbon acid sugar kinase family protein, at 2,431,102 to 2,432,436 _RS11765 Position (kb) 2430 2431Strain fitness (log2 ratio) -1 0 1at 2429.877 kb on - strandat 2430.564 kb on - strandat 2430.564 kb on - strandat 2430.710 kb on + strand, within ABID97_RS11760at 2430.948 kb on - strandat 2431.645 kb on - strand, within ABID97_RS11765

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,429,877 - +0.1
2,430,564 - +0.7
2,430,564 - -0.1
2,430,710 + ABID97_RS11760 0.41 -1.3
2,430,948 - +1.0
2,431,645 - ABID97_RS11765 0.41 -0.4

Or see this region's nucleotide sequence