Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11725

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11720 and ABID97_RS11725 are separated by 41 nucleotidesABID97_RS11725 and ABID97_RS11730 are separated by 65 nucleotidesABID97_RS11730 and ABID97_RS11735 overlap by 4 nucleotides ABID97_RS11720: ABID97_RS11720 - Rieske 2Fe-2S domain-containing protein, at 2,423,704 to 2,425,056 _RS11720 ABID97_RS11725: ABID97_RS11725 - tripartite tricarboxylate transporter substrate binding protein, at 2,425,098 to 2,426,081 _RS11725 ABID97_RS11730: ABID97_RS11730 - fumarylacetoacetate hydrolase family protein, at 2,426,147 to 2,426,995 _RS11730 ABID97_RS11735: ABID97_RS11735 - PDR/VanB family oxidoreductase, at 2,426,992 to 2,427,963 _RS11735 Position (kb) 2425 2426 2427Strain fitness (log2 ratio) -2 -1 0 1at 2424.106 kb on + strand, within ABID97_RS11720at 2424.551 kb on - strand, within ABID97_RS11720at 2424.556 kb on + strand, within ABID97_RS11720at 2424.647 kb on - strand, within ABID97_RS11720at 2424.819 kb on - strand, within ABID97_RS11720at 2425.078 kb on - strandat 2425.185 kb on + strandat 2425.493 kb on - strand, within ABID97_RS11725at 2425.496 kb on - strand, within ABID97_RS11725at 2425.496 kb on - strand, within ABID97_RS11725at 2425.572 kb on + strand, within ABID97_RS11725at 2426.162 kb on + strandat 2426.163 kb on - strandat 2426.918 kb on + strandat 2426.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,424,106 + ABID97_RS11720 0.30 -2.3
2,424,551 - ABID97_RS11720 0.63 +0.3
2,424,556 + ABID97_RS11720 0.63 +0.9
2,424,647 - ABID97_RS11720 0.70 -0.7
2,424,819 - ABID97_RS11720 0.82 +0.5
2,425,078 - +1.2
2,425,185 + -0.4
2,425,493 - ABID97_RS11725 0.40 +0.6
2,425,496 - ABID97_RS11725 0.40 -0.3
2,425,496 - ABID97_RS11725 0.40 +0.3
2,425,572 + ABID97_RS11725 0.48 +0.5
2,426,162 + -0.7
2,426,163 - +0.3
2,426,918 + +0.1
2,426,918 + +1.2

Or see this region's nucleotide sequence