Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11720 and ABID97_RS11725 are separated by 41 nucleotides ABID97_RS11725 and ABID97_RS11730 are separated by 65 nucleotides ABID97_RS11730 and ABID97_RS11735 overlap by 4 nucleotides
ABID97_RS11720: ABID97_RS11720 - Rieske 2Fe-2S domain-containing protein, at 2,423,704 to 2,425,056
_RS11720
ABID97_RS11725: ABID97_RS11725 - tripartite tricarboxylate transporter substrate binding protein, at 2,425,098 to 2,426,081
_RS11725
ABID97_RS11730: ABID97_RS11730 - fumarylacetoacetate hydrolase family protein, at 2,426,147 to 2,426,995
_RS11730
ABID97_RS11735: ABID97_RS11735 - PDR/VanB family oxidoreductase, at 2,426,992 to 2,427,963
_RS11735
Position (kb)
2425
2426
2427 Strain fitness (log2 ratio)
-2
-1
0
1 at 2424.106 kb on + strand, within ABID97_RS11720 at 2424.551 kb on - strand, within ABID97_RS11720 at 2424.556 kb on + strand, within ABID97_RS11720 at 2424.647 kb on - strand, within ABID97_RS11720 at 2424.819 kb on - strand, within ABID97_RS11720 at 2425.078 kb on - strand at 2425.185 kb on + strand at 2425.493 kb on - strand, within ABID97_RS11725 at 2425.496 kb on - strand, within ABID97_RS11725 at 2425.496 kb on - strand, within ABID97_RS11725 at 2425.572 kb on + strand, within ABID97_RS11725 at 2426.162 kb on + strand at 2426.163 kb on - strand at 2426.918 kb on + strand at 2426.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 2,424,106 + ABID97_RS11720 0.30 -2.3 2,424,551 - ABID97_RS11720 0.63 +0.3 2,424,556 + ABID97_RS11720 0.63 +0.9 2,424,647 - ABID97_RS11720 0.70 -0.7 2,424,819 - ABID97_RS11720 0.82 +0.5 2,425,078 - +1.2 2,425,185 + -0.4 2,425,493 - ABID97_RS11725 0.40 +0.6 2,425,496 - ABID97_RS11725 0.40 -0.3 2,425,496 - ABID97_RS11725 0.40 +0.3 2,425,572 + ABID97_RS11725 0.48 +0.5 2,426,162 + -0.7 2,426,163 - +0.3 2,426,918 + +0.1 2,426,918 + +1.2
Or see this region's nucleotide sequence