Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09525

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09520 and ABID97_RS09525 are separated by 67 nucleotidesABID97_RS09525 and ABID97_RS09530 overlap by 4 nucleotides ABID97_RS09520: ABID97_RS09520 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 2,000,412 to 2,001,479 _RS09520 ABID97_RS09525: ABID97_RS09525 - DUF2059 domain-containing protein, at 2,001,547 to 2,002,137 _RS09525 ABID97_RS09530: ABID97_RS09530 - DNA gyrase subunit A, at 2,002,134 to 2,004,779 _RS09530 Position (kb) 2001 2002 2003Strain fitness (log2 ratio) -1 0 1at 2001.882 kb on - strand, within ABID97_RS09525at 2002.053 kb on + strand, within ABID97_RS09525at 2002.054 kb on - strand, within ABID97_RS09525at 2002.054 kb on - strand, within ABID97_RS09525at 2002.167 kb on - strandat 2002.167 kb on - strandat 2002.167 kb on - strandat 2002.214 kb on + strandat 2002.214 kb on + strandat 2002.214 kb on + strandat 2002.214 kb on + strandat 2002.214 kb on + strandat 2002.215 kb on - strandat 2002.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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2,001,882 - ABID97_RS09525 0.57 -0.1
2,002,053 + ABID97_RS09525 0.86 +0.7
2,002,054 - ABID97_RS09525 0.86 +0.2
2,002,054 - ABID97_RS09525 0.86 +0.4
2,002,167 - -0.4
2,002,167 - +0.3
2,002,167 - +0.3
2,002,214 + -0.1
2,002,214 + -1.6
2,002,214 + +0.0
2,002,214 + -0.2
2,002,214 + -0.6
2,002,215 - +0.2
2,002,215 - -0.4

Or see this region's nucleotide sequence