Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09475 and ABID97_RS09480 are separated by 209 nucleotides ABID97_RS09480 and ABID97_RS09485 are separated by 145 nucleotides ABID97_RS09485 and ABID97_RS09490 overlap by 11 nucleotides ABID97_RS09490 and ABID97_RS09495 are separated by 54 nucleotides ABID97_RS09495 and ABID97_RS09500 are separated by 71 nucleotides
ABID97_RS09475: ABID97_RS09475 - TRAP transporter substrate-binding protein, at 1,990,783 to 1,991,751
_RS09475
ABID97_RS09480: ABID97_RS09480 - helix-hairpin-helix domain-containing protein, at 1,991,961 to 1,992,326
_RS09480
ABID97_RS09485: ABID97_RS09485 - lipopolysaccharide assembly protein LapB, at 1,992,472 to 1,993,650
_RS09485
ABID97_RS09490: ABID97_RS09490 - LapA family protein, at 1,993,640 to 1,993,981
_RS09490
ABID97_RS09495: ABID97_RS09495 - integration host factor subunit beta, at 1,994,036 to 1,994,362
_RS09495
ABID97_RS09500: ABID97_RS09500 - 30S ribosomal protein S1, at 1,994,434 to 1,996,122
_RS09500
Position (kb)
1992
1993
1994 Strain fitness (log2 ratio)
-1
0
1 at 1991.483 kb on + strand, within ABID97_RS09475 at 1991.483 kb on + strand, within ABID97_RS09475 at 1991.649 kb on - strand, within ABID97_RS09475 at 1991.793 kb on + strand at 1991.793 kb on + strand at 1991.793 kb on + strand at 1991.793 kb on + strand at 1991.794 kb on - strand at 1993.668 kb on - strand at 1993.875 kb on + strand, within ABID97_RS09490 at 1993.894 kb on - strand, within ABID97_RS09490 at 1994.008 kb on + strand at 1994.008 kb on + strand at 1994.009 kb on - strand at 1994.362 kb on + strand at 1994.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,991,483 + ABID97_RS09475 0.72 -1.0 1,991,483 + ABID97_RS09475 0.72 +0.1 1,991,649 - ABID97_RS09475 0.89 -0.1 1,991,793 + -0.4 1,991,793 + -0.2 1,991,793 + -0.1 1,991,793 + +1.3 1,991,794 - +1.0 1,993,668 - +0.4 1,993,875 + ABID97_RS09490 0.69 +1.3 1,993,894 - ABID97_RS09490 0.74 +0.8 1,994,008 + -0.6 1,994,008 + +0.4 1,994,009 - -0.2 1,994,362 + +0.1 1,994,436 - -0.2
Or see this region's nucleotide sequence