Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08610

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08600 and ABID97_RS08605 are separated by 10 nucleotidesABID97_RS08605 and ABID97_RS08610 are separated by 77 nucleotidesABID97_RS08610 and ABID97_RS08615 are separated by 34 nucleotides ABID97_RS08600: ABID97_RS08600 - kynureninase, at 1,806,432 to 1,807,718 _RS08600 ABID97_RS08605: ABID97_RS08605 - arylformamidase, at 1,807,729 to 1,808,379 _RS08605 ABID97_RS08610: ABID97_RS08610 - YkgJ family cysteine cluster protein, at 1,808,457 to 1,808,771 _RS08610 ABID97_RS08615: ABID97_RS08615 - HAMP domain-containing sensor histidine kinase, at 1,808,806 to 1,810,161 _RS08615 Position (kb) 1808 1809Strain fitness (log2 ratio) -2 -1 0 1at 1807.627 kb on + strandat 1807.627 kb on + strandat 1807.628 kb on - strandat 1807.751 kb on - strandat 1807.811 kb on + strand, within ABID97_RS08605at 1807.811 kb on + strand, within ABID97_RS08605at 1808.030 kb on + strand, within ABID97_RS08605at 1808.030 kb on + strand, within ABID97_RS08605at 1808.552 kb on - strand, within ABID97_RS08610at 1808.552 kb on - strand, within ABID97_RS08610at 1808.552 kb on - strand, within ABID97_RS08610at 1808.552 kb on - strand, within ABID97_RS08610at 1808.552 kb on - strand, within ABID97_RS08610

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,807,627 + +0.0
1,807,627 + -2.3
1,807,628 - +0.2
1,807,751 - -0.3
1,807,811 + ABID97_RS08605 0.13 +0.0
1,807,811 + ABID97_RS08605 0.13 -0.1
1,808,030 + ABID97_RS08605 0.46 -0.4
1,808,030 + ABID97_RS08605 0.46 -0.3
1,808,552 - ABID97_RS08610 0.30 +0.8
1,808,552 - ABID97_RS08610 0.30 -0.4
1,808,552 - ABID97_RS08610 0.30 +0.7
1,808,552 - ABID97_RS08610 0.30 -0.2
1,808,552 - ABID97_RS08610 0.30 +0.0

Or see this region's nucleotide sequence