Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08480 and ABID97_RS08485 are separated by 24 nucleotides ABID97_RS08485 and ABID97_RS08490 are separated by 18 nucleotides ABID97_RS08490 and ABID97_RS08495 are separated by 27 nucleotides
ABID97_RS08480: ABID97_RS08480 - citrate synthase, at 1,781,502 to 1,782,812
_RS08480
ABID97_RS08485: ABID97_RS08485 - succinate dehydrogenase assembly factor 2, at 1,782,837 to 1,783,160
_RS08485
ABID97_RS08490: ABID97_RS08490 - succinate dehydrogenase iron-sulfur subunit, at 1,783,179 to 1,783,880
_RS08490
ABID97_RS08495: ABID97_RS08495 - succinate dehydrogenase flavoprotein subunit, at 1,783,908 to 1,785,716
_RS08495
Position (kb)
1783
1784 Strain fitness (log2 ratio)
-1
0
1 at 1782.221 kb on - strand, within ABID97_RS08480 at 1782.248 kb on - strand, within ABID97_RS08480 at 1782.248 kb on - strand, within ABID97_RS08480 at 1782.674 kb on - strand, within ABID97_RS08480 at 1782.834 kb on + strand at 1782.834 kb on + strand at 1783.910 kb on - strand at 1783.910 kb on - strand at 1783.910 kb on - strand at 1783.910 kb on - strand at 1783.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,782,221 - ABID97_RS08480 0.55 +1.4 1,782,248 - ABID97_RS08480 0.57 +1.4 1,782,248 - ABID97_RS08480 0.57 +0.3 1,782,674 - ABID97_RS08480 0.89 +0.8 1,782,834 + -0.3 1,782,834 + -0.3 1,783,910 - +0.2 1,783,910 - +0.8 1,783,910 - -0.6 1,783,910 - -0.2 1,783,910 - -0.1
Or see this region's nucleotide sequence