Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08490

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08480 and ABID97_RS08485 are separated by 24 nucleotidesABID97_RS08485 and ABID97_RS08490 are separated by 18 nucleotidesABID97_RS08490 and ABID97_RS08495 are separated by 27 nucleotides ABID97_RS08480: ABID97_RS08480 - citrate synthase, at 1,781,502 to 1,782,812 _RS08480 ABID97_RS08485: ABID97_RS08485 - succinate dehydrogenase assembly factor 2, at 1,782,837 to 1,783,160 _RS08485 ABID97_RS08490: ABID97_RS08490 - succinate dehydrogenase iron-sulfur subunit, at 1,783,179 to 1,783,880 _RS08490 ABID97_RS08495: ABID97_RS08495 - succinate dehydrogenase flavoprotein subunit, at 1,783,908 to 1,785,716 _RS08495 Position (kb) 1783 1784Strain fitness (log2 ratio) -1 0 1at 1782.221 kb on - strand, within ABID97_RS08480at 1782.248 kb on - strand, within ABID97_RS08480at 1782.248 kb on - strand, within ABID97_RS08480at 1782.674 kb on - strand, within ABID97_RS08480at 1782.834 kb on + strandat 1782.834 kb on + strandat 1783.910 kb on - strandat 1783.910 kb on - strandat 1783.910 kb on - strandat 1783.910 kb on - strandat 1783.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,782,221 - ABID97_RS08480 0.55 +1.4
1,782,248 - ABID97_RS08480 0.57 +1.4
1,782,248 - ABID97_RS08480 0.57 +0.3
1,782,674 - ABID97_RS08480 0.89 +0.8
1,782,834 + -0.3
1,782,834 + -0.3
1,783,910 - +0.2
1,783,910 - +0.8
1,783,910 - -0.6
1,783,910 - -0.2
1,783,910 - -0.1

Or see this region's nucleotide sequence