Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08190 and ABID97_RS08195 are separated by 22 nucleotides ABID97_RS08195 and ABID97_RS08200 overlap by 4 nucleotides ABID97_RS08200 and ABID97_RS08205 overlap by 4 nucleotides
ABID97_RS08190: ABID97_RS08190 - argininosuccinate lyase, at 1,720,255 to 1,721,652
_RS08190
ABID97_RS08195: ABID97_RS08195 - histidine kinase, at 1,721,675 to 1,722,775
_RS08195
ABID97_RS08200: ABID97_RS08200 - LytTR family DNA-binding domain-containing protein, at 1,722,772 to 1,723,518
_RS08200
ABID97_RS08205: ABID97_RS08205 - AI-2E family transporter, at 1,723,515 to 1,724,780
_RS08205
Position (kb) 1721
1722
1723 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1721.694 kb on + strand at 1721.695 kb on - strand at 1721.695 kb on - strand at 1721.695 kb on - strand at 1722.011 kb on + strand, within ABID97_RS08195 at 1722.011 kb on + strand, within ABID97_RS08195 at 1722.011 kb on + strand, within ABID97_RS08195 at 1722.011 kb on + strand, within ABID97_RS08195 at 1722.012 kb on - strand, within ABID97_RS08195 at 1722.050 kb on + strand, within ABID97_RS08195 at 1722.392 kb on + strand, within ABID97_RS08195 at 1722.741 kb on - strand at 1722.748 kb on - strand at 1723.075 kb on + strand, within ABID97_RS08200 at 1723.076 kb on - strand, within ABID97_RS08200 at 1723.252 kb on + strand, within ABID97_RS08200 at 1723.253 kb on - strand, within ABID97_RS08200 at 1723.258 kb on + strand, within ABID97_RS08200 at 1723.258 kb on + strand, within ABID97_RS08200 at 1723.258 kb on + strand, within ABID97_RS08200 at 1723.258 kb on + strand, within ABID97_RS08200 at 1723.259 kb on - strand, within ABID97_RS08200 at 1723.259 kb on - strand, within ABID97_RS08200 at 1723.399 kb on + strand, within ABID97_RS08200 at 1723.400 kb on - strand, within ABID97_RS08200
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,721,694 + -0.0 1,721,695 - -0.5 1,721,695 - +0.3 1,721,695 - -1.4 1,722,011 + ABID97_RS08195 0.31 +1.3 1,722,011 + ABID97_RS08195 0.31 -0.8 1,722,011 + ABID97_RS08195 0.31 -2.1 1,722,011 + ABID97_RS08195 0.31 -1.1 1,722,012 - ABID97_RS08195 0.31 -1.1 1,722,050 + ABID97_RS08195 0.34 -1.2 1,722,392 + ABID97_RS08195 0.65 -0.9 1,722,741 - -0.4 1,722,748 - -2.4 1,723,075 + ABID97_RS08200 0.41 -1.0 1,723,076 - ABID97_RS08200 0.41 -1.0 1,723,252 + ABID97_RS08200 0.64 -1.6 1,723,253 - ABID97_RS08200 0.64 -1.5 1,723,258 + ABID97_RS08200 0.65 -0.6 1,723,258 + ABID97_RS08200 0.65 -3.5 1,723,258 + ABID97_RS08200 0.65 -2.0 1,723,258 + ABID97_RS08200 0.65 -1.1 1,723,259 - ABID97_RS08200 0.65 -0.0 1,723,259 - ABID97_RS08200 0.65 +0.9 1,723,399 + ABID97_RS08200 0.84 -0.7 1,723,400 - ABID97_RS08200 0.84 +0.6
Or see this region's nucleotide sequence