Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07190

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07180 and ABID97_RS07185 are separated by 29 nucleotidesABID97_RS07185 and ABID97_RS07190 overlap by 4 nucleotidesABID97_RS07190 and ABID97_RS07195 are separated by 144 nucleotides ABID97_RS07180: ABID97_RS07180 - Grx4 family monothiol glutaredoxin, at 1,521,444 to 1,521,773 _RS07180 ABID97_RS07185: ABID97_RS07185 - peptide chain release factor N(5)-glutamine methyltransferase, at 1,521,803 to 1,522,657 _RS07185 ABID97_RS07190: ABID97_RS07190 - peptide chain release factor 1, at 1,522,654 to 1,523,742 _RS07190 ABID97_RS07195: ABID97_RS07195 - glutamyl-tRNA reductase, at 1,523,887 to 1,525,158 _RS07195 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -1 0 1at 1521.804 kb on + strandat 1521.804 kb on + strandat 1521.805 kb on - strandat 1521.805 kb on - strandat 1521.805 kb on - strandat 1521.805 kb on - strandat 1522.081 kb on - strand, within ABID97_RS07185

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,521,804 + -0.8
1,521,804 + +0.4
1,521,805 - +0.4
1,521,805 - -0.0
1,521,805 - -1.5
1,521,805 - -0.4
1,522,081 - ABID97_RS07185 0.33 +1.7

Or see this region's nucleotide sequence