Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06375 and ABID97_RS06380 are separated by 18 nucleotides ABID97_RS06380 and ABID97_RS06385 are separated by 73 nucleotides
ABID97_RS06375: ABID97_RS06375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,344,942 to 1,346,291
_RS06375
ABID97_RS06380: ABID97_RS06380 - 50S ribosomal protein L11 methyltransferase, at 1,346,310 to 1,347,194
_RS06380
ABID97_RS06385: ABID97_RS06385 - zinc-ribbon and DUF3426 domain-containing protein, at 1,347,268 to 1,348,572
_RS06385
Position (kb)
1346
1347
1348 Strain fitness (log2 ratio)
-2
-1
0
1 at 1346.296 kb on + strand at 1346.820 kb on + strand, within ABID97_RS06380 at 1347.123 kb on + strand at 1347.123 kb on + strand at 1347.123 kb on + strand at 1347.123 kb on + strand at 1347.123 kb on + strand at 1347.123 kb on + strand at 1347.123 kb on + strand at 1347.124 kb on - strand at 1347.124 kb on - strand at 1347.132 kb on + strand at 1347.253 kb on + strand at 1347.253 kb on + strand at 1347.253 kb on + strand at 1347.254 kb on - strand at 1347.254 kb on - strand at 1347.254 kb on - strand at 1347.254 kb on - strand at 1347.605 kb on + strand, within ABID97_RS06385 at 1347.606 kb on - strand, within ABID97_RS06385 at 1347.786 kb on + strand, within ABID97_RS06385
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 1,346,296 + -0.0 1,346,820 + ABID97_RS06380 0.58 -1.8 1,347,123 + -0.2 1,347,123 + -0.4 1,347,123 + -0.4 1,347,123 + -0.7 1,347,123 + -0.4 1,347,123 + +0.4 1,347,123 + -0.6 1,347,124 - +0.2 1,347,124 - +0.7 1,347,132 + -0.2 1,347,253 + -0.8 1,347,253 + +0.9 1,347,253 + -1.3 1,347,254 - +0.1 1,347,254 - -0.6 1,347,254 - +0.0 1,347,254 - +1.2 1,347,605 + ABID97_RS06385 0.26 -0.0 1,347,606 - ABID97_RS06385 0.26 +0.4 1,347,786 + ABID97_RS06385 0.40 +0.4
Or see this region's nucleotide sequence