Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06000

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05995 and ABID97_RS06000 are separated by 13 nucleotidesABID97_RS06000 and ABID97_RS06005 are separated by 10 nucleotides ABID97_RS05995: ABID97_RS05995 - acyl-CoA dehydrogenase family protein, at 1,267,455 to 1,268,597 _RS05995 ABID97_RS06000: ABID97_RS06000 - acyl-CoA dehydrogenase family protein, at 1,268,611 to 1,269,819 _RS06000 ABID97_RS06005: ABID97_RS06005 - acetyl-CoA C-acyltransferase, at 1,269,830 to 1,271,020 _RS06005 Position (kb) 1268 1269 1270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1267.819 kb on + strand, within ABID97_RS05995at 1267.819 kb on + strand, within ABID97_RS05995at 1268.721 kb on - strandat 1268.786 kb on + strand, within ABID97_RS06000at 1269.080 kb on + strand, within ABID97_RS06000at 1269.081 kb on - strand, within ABID97_RS06000at 1269.092 kb on + strand, within ABID97_RS06000at 1269.093 kb on - strand, within ABID97_RS06000at 1269.146 kb on - strand, within ABID97_RS06000at 1269.356 kb on + strand, within ABID97_RS06000at 1269.357 kb on - strand, within ABID97_RS06000at 1269.357 kb on - strand, within ABID97_RS06000at 1269.357 kb on - strand, within ABID97_RS06000at 1269.357 kb on - strand, within ABID97_RS06000at 1269.357 kb on - strand, within ABID97_RS06000at 1269.357 kb on - strand, within ABID97_RS06000at 1269.510 kb on - strand, within ABID97_RS06000at 1269.510 kb on - strand, within ABID97_RS06000at 1269.510 kb on - strand, within ABID97_RS06000at 1269.895 kb on - strandat 1270.035 kb on + strand, within ABID97_RS06005at 1270.035 kb on + strand, within ABID97_RS06005at 1270.036 kb on - strand, within ABID97_RS06005at 1270.336 kb on - strand, within ABID97_RS06005at 1270.336 kb on - strand, within ABID97_RS06005at 1270.578 kb on + strand, within ABID97_RS06005at 1270.578 kb on + strand, within ABID97_RS06005at 1270.578 kb on + strand, within ABID97_RS06005at 1270.578 kb on + strand, within ABID97_RS06005at 1270.579 kb on - strand, within ABID97_RS06005at 1270.579 kb on - strand, within ABID97_RS06005

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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1,267,819 + ABID97_RS05995 0.32 -0.4
1,267,819 + ABID97_RS05995 0.32 +3.4
1,268,721 - +0.9
1,268,786 + ABID97_RS06000 0.14 -0.2
1,269,080 + ABID97_RS06000 0.39 -0.5
1,269,081 - ABID97_RS06000 0.39 -0.3
1,269,092 + ABID97_RS06000 0.40 +0.8
1,269,093 - ABID97_RS06000 0.40 -1.5
1,269,146 - ABID97_RS06000 0.44 -0.3
1,269,356 + ABID97_RS06000 0.62 +0.5
1,269,357 - ABID97_RS06000 0.62 -0.2
1,269,357 - ABID97_RS06000 0.62 -0.2
1,269,357 - ABID97_RS06000 0.62 -1.1
1,269,357 - ABID97_RS06000 0.62 -0.2
1,269,357 - ABID97_RS06000 0.62 +0.8
1,269,357 - ABID97_RS06000 0.62 -0.1
1,269,510 - ABID97_RS06000 0.74 -0.1
1,269,510 - ABID97_RS06000 0.74 -0.3
1,269,510 - ABID97_RS06000 0.74 +1.3
1,269,895 - +0.1
1,270,035 + ABID97_RS06005 0.17 +0.5
1,270,035 + ABID97_RS06005 0.17 -1.2
1,270,036 - ABID97_RS06005 0.17 -1.4
1,270,336 - ABID97_RS06005 0.42 -0.1
1,270,336 - ABID97_RS06005 0.42 -0.0
1,270,578 + ABID97_RS06005 0.63 +2.2
1,270,578 + ABID97_RS06005 0.63 -0.7
1,270,578 + ABID97_RS06005 0.63 +0.1
1,270,578 + ABID97_RS06005 0.63 -1.0
1,270,579 - ABID97_RS06005 0.63 -2.5
1,270,579 - ABID97_RS06005 0.63 -0.2

Or see this region's nucleotide sequence