Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04625 and ABID97_RS04630 overlap by 4 nucleotides ABID97_RS04630 and ABID97_RS04635 are separated by 18 nucleotides ABID97_RS04635 and ABID97_RS04640 are separated by 50 nucleotides
ABID97_RS04625: ABID97_RS04625 - benzoate/H(+) symporter BenE family transporter, at 964,043 to 965,308
_RS04625
ABID97_RS04630: ABID97_RS04630 - glutathione synthase, at 965,305 to 966,258
_RS04630
ABID97_RS04635: ABID97_RS04635 - class II glutamine amidotransferase, at 966,277 to 967,044
_RS04635
ABID97_RS04640: ABID97_RS04640 - ABC transporter substrate-binding protein, at 967,095 to 968,234
_RS04640
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1
2 at 965.353 kb on + strand at 965.353 kb on + strand at 965.353 kb on + strand at 965.354 kb on - strand at 965.590 kb on + strand, within ABID97_RS04630 at 965.590 kb on + strand, within ABID97_RS04630 at 965.591 kb on - strand, within ABID97_RS04630 at 965.596 kb on + strand, within ABID97_RS04630 at 965.596 kb on + strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.597 kb on - strand, within ABID97_RS04630 at 965.846 kb on + strand, within ABID97_RS04630 at 965.847 kb on - strand, within ABID97_RS04630 at 966.474 kb on - strand, within ABID97_RS04635 at 966.474 kb on - strand, within ABID97_RS04635 at 967.050 kb on + strand at 967.053 kb on + strand at 967.054 kb on - strand at 967.054 kb on - strand at 967.291 kb on + strand, within ABID97_RS04640 at 967.310 kb on - strand, within ABID97_RS04640 at 967.385 kb on - strand, within ABID97_RS04640 at 967.470 kb on + strand, within ABID97_RS04640 at 967.471 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.498 kb on + strand, within ABID97_RS04640 at 967.499 kb on - strand, within ABID97_RS04640 at 967.512 kb on + strand, within ABID97_RS04640 at 967.512 kb on + strand, within ABID97_RS04640 at 967.512 kb on + strand, within ABID97_RS04640 at 967.513 kb on - strand, within ABID97_RS04640 at 967.540 kb on + strand, within ABID97_RS04640 at 967.540 kb on + strand, within ABID97_RS04640 at 967.541 kb on - strand, within ABID97_RS04640 at 967.541 kb on - strand, within ABID97_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 965,353 + -0.0 965,353 + -0.4 965,353 + -1.4 965,354 - -0.1 965,590 + ABID97_RS04630 0.30 -0.7 965,590 + ABID97_RS04630 0.30 -0.9 965,591 - ABID97_RS04630 0.30 -0.1 965,596 + ABID97_RS04630 0.31 +0.6 965,596 + ABID97_RS04630 0.31 +0.5 965,597 - ABID97_RS04630 0.31 -1.3 965,597 - ABID97_RS04630 0.31 -0.4 965,597 - ABID97_RS04630 0.31 -2.2 965,597 - ABID97_RS04630 0.31 +0.5 965,846 + ABID97_RS04630 0.57 -0.9 965,847 - ABID97_RS04630 0.57 -1.7 966,474 - ABID97_RS04635 0.26 -0.2 966,474 - ABID97_RS04635 0.26 -0.2 967,050 + +0.3 967,053 + +1.1 967,054 - -0.8 967,054 - +1.6 967,291 + ABID97_RS04640 0.17 -1.3 967,310 - ABID97_RS04640 0.19 +0.1 967,385 - ABID97_RS04640 0.25 -1.0 967,470 + ABID97_RS04640 0.33 +2.1 967,471 + ABID97_RS04640 0.33 -1.1 967,498 + ABID97_RS04640 0.35 -0.8 967,498 + ABID97_RS04640 0.35 -0.6 967,498 + ABID97_RS04640 0.35 -0.0 967,498 + ABID97_RS04640 0.35 +0.9 967,499 - ABID97_RS04640 0.35 -0.4 967,512 + ABID97_RS04640 0.37 -0.6 967,512 + ABID97_RS04640 0.37 -0.0 967,512 + ABID97_RS04640 0.37 -0.2 967,513 - ABID97_RS04640 0.37 -0.3 967,540 + ABID97_RS04640 0.39 -0.3 967,540 + ABID97_RS04640 0.39 +0.6 967,541 - ABID97_RS04640 0.39 -0.6 967,541 - ABID97_RS04640 0.39 -0.3
Or see this region's nucleotide sequence