Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04545

Experiment: butyrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04540 and ABID97_RS04545 are separated by 40 nucleotidesABID97_RS04545 and ABID97_RS04550 are separated by 4 nucleotides ABID97_RS04540: ABID97_RS04540 - glucose-1-phosphate adenylyltransferase, at 941,143 to 942,447 _RS04540 ABID97_RS04545: ABID97_RS04545 - glycogen debranching protein GlgX, at 942,488 to 944,611 _RS04545 ABID97_RS04550: ABID97_RS04550 - 1,4-alpha-glucan branching protein GlgB, at 944,616 to 946,787 _RS04550 Position (kb) 942 943 944 945Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 941.528 kb on + strand, within ABID97_RS04540at 941.528 kb on + strand, within ABID97_RS04540at 941.528 kb on + strand, within ABID97_RS04540at 941.528 kb on + strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.609 kb on + strand, within ABID97_RS04540at 941.766 kb on - strand, within ABID97_RS04540at 941.771 kb on + strand, within ABID97_RS04540at 941.789 kb on + strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.991 kb on - strand, within ABID97_RS04540at 942.003 kb on - strand, within ABID97_RS04540at 942.032 kb on + strand, within ABID97_RS04540at 942.032 kb on + strand, within ABID97_RS04540at 942.032 kb on + strand, within ABID97_RS04540at 942.032 kb on + strandat 942.033 kb on - strand, within ABID97_RS04540at 942.033 kb on - strand, within ABID97_RS04540at 942.033 kb on - strand, within ABID97_RS04540at 942.101 kb on + strand, within ABID97_RS04540at 942.218 kb on + strand, within ABID97_RS04540at 942.219 kb on - strand, within ABID97_RS04540at 942.219 kb on - strand, within ABID97_RS04540at 942.305 kb on + strand, within ABID97_RS04540at 942.305 kb on + strand, within ABID97_RS04540at 942.305 kb on + strand, within ABID97_RS04540at 942.306 kb on - strand, within ABID97_RS04540at 942.509 kb on - strandat 942.509 kb on - strandat 942.984 kb on + strand, within ABID97_RS04545at 942.984 kb on + strand, within ABID97_RS04545at 943.701 kb on + strand, within ABID97_RS04545at 943.731 kb on + strand, within ABID97_RS04545at 943.731 kb on + strand, within ABID97_RS04545at 943.732 kb on - strand, within ABID97_RS04545at 943.732 kb on - strand, within ABID97_RS04545at 943.732 kb on - strand, within ABID97_RS04545at 943.732 kb on - strand, within ABID97_RS04545at 943.732 kb on - strand, within ABID97_RS04545at 943.734 kb on + strand, within ABID97_RS04545at 943.734 kb on + strand, within ABID97_RS04545at 943.735 kb on - strand, within ABID97_RS04545at 943.735 kb on - strand, within ABID97_RS04545at 943.803 kb on + strand, within ABID97_RS04545at 943.938 kb on + strand, within ABID97_RS04545at 943.938 kb on + strand, within ABID97_RS04545at 943.948 kb on - strand, within ABID97_RS04545at 943.948 kb on - strand, within ABID97_RS04545at 944.073 kb on + strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.074 kb on - strand, within ABID97_RS04545at 944.325 kb on + strand, within ABID97_RS04545at 944.403 kb on + strandat 944.403 kb on + strandat 944.404 kb on - strandat 944.738 kb on - strandat 944.771 kb on - strandat 944.800 kb on + strandat 944.945 kb on - strand, within ABID97_RS04550at 944.945 kb on - strand, within ABID97_RS04550at 945.128 kb on - strandat 945.250 kb on + strand, within ABID97_RS04550at 945.250 kb on + strand, within ABID97_RS04550at 945.251 kb on - strand, within ABID97_RS04550at 945.251 kb on - strand, within ABID97_RS04550at 945.251 kb on - strand, within ABID97_RS04550at 945.324 kb on - strand, within ABID97_RS04550at 945.324 kb on - strand, within ABID97_RS04550at 945.352 kb on + strand, within ABID97_RS04550at 945.352 kb on + strand, within ABID97_RS04550at 945.352 kb on + strand, within ABID97_RS04550at 945.352 kb on + strand, within ABID97_RS04550at 945.353 kb on - strand, within ABID97_RS04550at 945.553 kb on + strand, within ABID97_RS04550

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Per-strain Table

Position Strand Gene LocusTag Fraction butyrate (C)
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941,528 + ABID97_RS04540 0.30 +1.4
941,528 + ABID97_RS04540 0.30 +1.4
941,528 + ABID97_RS04540 0.30 +1.0
941,528 + ABID97_RS04540 0.30 +1.6
941,529 - ABID97_RS04540 0.30 +0.9
941,529 - ABID97_RS04540 0.30 +1.4
941,529 - ABID97_RS04540 0.30 +0.7
941,529 - ABID97_RS04540 0.30 +0.6
941,529 - ABID97_RS04540 0.30 +0.0
941,529 - ABID97_RS04540 0.30 +0.5
941,609 + ABID97_RS04540 0.36 +0.7
941,766 - ABID97_RS04540 0.48 +0.2
941,771 + ABID97_RS04540 0.48 +0.8
941,789 + ABID97_RS04540 0.50 +1.9
941,790 - ABID97_RS04540 0.50 +0.9
941,790 - ABID97_RS04540 0.50 +1.2
941,790 - ABID97_RS04540 0.50 +0.0
941,790 - ABID97_RS04540 0.50 +0.2
941,790 - ABID97_RS04540 0.50 +0.7
941,991 - ABID97_RS04540 0.65 +0.9
942,003 - ABID97_RS04540 0.66 +0.4
942,032 + ABID97_RS04540 0.68 +0.9
942,032 + ABID97_RS04540 0.68 +0.3
942,032 + ABID97_RS04540 0.68 +0.5
942,032 + +1.7
942,033 - ABID97_RS04540 0.68 -0.0
942,033 - ABID97_RS04540 0.68 -0.0
942,033 - ABID97_RS04540 0.68 +1.0
942,101 + ABID97_RS04540 0.73 +0.6
942,218 + ABID97_RS04540 0.82 +1.6
942,219 - ABID97_RS04540 0.82 -0.2
942,219 - ABID97_RS04540 0.82 -0.7
942,305 + ABID97_RS04540 0.89 +0.3
942,305 + ABID97_RS04540 0.89 +0.4
942,305 + ABID97_RS04540 0.89 +0.6
942,306 - ABID97_RS04540 0.89 +1.0
942,509 - +2.1
942,509 - +1.7
942,984 + ABID97_RS04545 0.23 -1.4
942,984 + ABID97_RS04545 0.23 +0.7
943,701 + ABID97_RS04545 0.57 +2.1
943,731 + ABID97_RS04545 0.59 +0.2
943,731 + ABID97_RS04545 0.59 +1.6
943,732 - ABID97_RS04545 0.59 +0.4
943,732 - ABID97_RS04545 0.59 +0.0
943,732 - ABID97_RS04545 0.59 -0.2
943,732 - ABID97_RS04545 0.59 +0.7
943,732 - ABID97_RS04545 0.59 +1.2
943,734 + ABID97_RS04545 0.59 +1.6
943,734 + ABID97_RS04545 0.59 +1.3
943,735 - ABID97_RS04545 0.59 +0.4
943,735 - ABID97_RS04545 0.59 -0.0
943,803 + ABID97_RS04545 0.62 +0.6
943,938 + ABID97_RS04545 0.68 +0.3
943,938 + ABID97_RS04545 0.68 +0.4
943,948 - ABID97_RS04545 0.69 +0.2
943,948 - ABID97_RS04545 0.69 +1.6
944,073 + ABID97_RS04545 0.75 +1.9
944,074 - ABID97_RS04545 0.75 -0.1
944,074 - ABID97_RS04545 0.75 -0.3
944,074 - ABID97_RS04545 0.75 +0.8
944,074 - ABID97_RS04545 0.75 +0.3
944,074 - ABID97_RS04545 0.75 +1.1
944,074 - ABID97_RS04545 0.75 +0.7
944,074 - ABID97_RS04545 0.75 -0.3
944,325 + ABID97_RS04545 0.86 +0.8
944,403 + +0.6
944,403 + +0.9
944,404 - +1.9
944,738 - -2.0
944,771 - -1.2
944,800 + -0.9
944,945 - ABID97_RS04550 0.15 -0.6
944,945 - ABID97_RS04550 0.15 -0.4
945,128 - +4.1
945,250 + ABID97_RS04550 0.29 -0.1
945,250 + ABID97_RS04550 0.29 +0.2
945,251 - ABID97_RS04550 0.29 +1.4
945,251 - ABID97_RS04550 0.29 -0.2
945,251 - ABID97_RS04550 0.29 +0.6
945,324 - ABID97_RS04550 0.33 +0.1
945,324 - ABID97_RS04550 0.33 +0.3
945,352 + ABID97_RS04550 0.34 +0.4
945,352 + ABID97_RS04550 0.34 +0.0
945,352 + ABID97_RS04550 0.34 +0.8
945,352 + ABID97_RS04550 0.34 +0.5
945,353 - ABID97_RS04550 0.34 -0.9
945,553 + ABID97_RS04550 0.43 -0.1

Or see this region's nucleotide sequence