Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04180 and ABID97_RS04185 are separated by 78 nucleotides ABID97_RS04185 and ABID97_RS04190 overlap by 4 nucleotides
ABID97_RS04180: ABID97_RS04180 - glycerophosphodiester phosphodiesterase, at 859,691 to 860,885
_RS04180
ABID97_RS04185: ABID97_RS04185 - M20 aminoacylase family protein, at 860,964 to 862,166
_RS04185
ABID97_RS04190: ABID97_RS04190 - M14 family metallopeptidase, at 862,163 to 863,257
_RS04190
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 860.210 kb on + strand, within ABID97_RS04180 at 860.210 kb on + strand, within ABID97_RS04180 at 860.234 kb on + strand, within ABID97_RS04180 at 860.235 kb on - strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.321 kb on + strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.322 kb on - strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.354 kb on + strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.355 kb on - strand, within ABID97_RS04180 at 860.542 kb on - strand, within ABID97_RS04180 at 860.572 kb on - strand, within ABID97_RS04180 at 860.572 kb on - strand, within ABID97_RS04180 at 860.760 kb on + strand, within ABID97_RS04180 at 860.785 kb on - strand at 860.793 kb on + strand at 860.793 kb on + strand at 860.793 kb on + strand at 860.794 kb on - strand at 860.796 kb on + strand at 860.797 kb on - strand at 860.797 kb on - strand at 860.863 kb on - strand at 861.345 kb on + strand, within ABID97_RS04185 at 861.345 kb on + strand, within ABID97_RS04185 at 861.346 kb on - strand, within ABID97_RS04185 at 861.843 kb on + strand, within ABID97_RS04185 at 861.844 kb on - strand, within ABID97_RS04185 at 861.993 kb on + strand, within ABID97_RS04185 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.463 kb on + strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.464 kb on - strand, within ABID97_RS04190 at 862.496 kb on + strand, within ABID97_RS04190 at 862.497 kb on - strand, within ABID97_RS04190 at 862.580 kb on + strand, within ABID97_RS04190 at 862.709 kb on + strand, within ABID97_RS04190 at 862.710 kb on - strand, within ABID97_RS04190 at 862.949 kb on + strand, within ABID97_RS04190 at 862.949 kb on + strand, within ABID97_RS04190 at 862.949 kb on + strand, within ABID97_RS04190 at 862.949 kb on + strand, within ABID97_RS04190 at 862.950 kb on - strand, within ABID97_RS04190 at 862.950 kb on - strand, within ABID97_RS04190 at 863.003 kb on + strand, within ABID97_RS04190 at 863.028 kb on - strand, within ABID97_RS04190 at 863.028 kb on - strand, within ABID97_RS04190
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 860,210 + ABID97_RS04180 0.43 -0.2 860,210 + ABID97_RS04180 0.43 -0.4 860,234 + ABID97_RS04180 0.45 -0.4 860,235 - ABID97_RS04180 0.46 -1.0 860,321 + ABID97_RS04180 0.53 -0.4 860,321 + ABID97_RS04180 0.53 -0.8 860,321 + ABID97_RS04180 0.53 +1.0 860,321 + ABID97_RS04180 0.53 -1.0 860,322 - ABID97_RS04180 0.53 +0.0 860,322 - ABID97_RS04180 0.53 +1.3 860,322 - ABID97_RS04180 0.53 +0.9 860,322 - ABID97_RS04180 0.53 -1.0 860,354 + ABID97_RS04180 0.55 -0.5 860,354 + ABID97_RS04180 0.55 -0.1 860,354 + ABID97_RS04180 0.55 -0.1 860,354 + ABID97_RS04180 0.55 -0.6 860,354 + ABID97_RS04180 0.55 -0.9 860,354 + ABID97_RS04180 0.55 -1.5 860,354 + ABID97_RS04180 0.55 -0.3 860,355 - ABID97_RS04180 0.56 +0.3 860,355 - ABID97_RS04180 0.56 -0.6 860,355 - ABID97_RS04180 0.56 -0.3 860,355 - ABID97_RS04180 0.56 +0.1 860,355 - ABID97_RS04180 0.56 -0.4 860,355 - ABID97_RS04180 0.56 -0.7 860,355 - ABID97_RS04180 0.56 -0.7 860,355 - ABID97_RS04180 0.56 -2.1 860,542 - ABID97_RS04180 0.71 -0.1 860,572 - ABID97_RS04180 0.74 -0.0 860,572 - ABID97_RS04180 0.74 -0.3 860,760 + ABID97_RS04180 0.89 +0.4 860,785 - -0.3 860,793 + -0.2 860,793 + -0.3 860,793 + -1.8 860,794 - -0.5 860,796 + +1.2 860,797 - +0.0 860,797 - -0.7 860,863 - -0.7 861,345 + ABID97_RS04185 0.32 +0.3 861,345 + ABID97_RS04185 0.32 -0.4 861,346 - ABID97_RS04185 0.32 +0.9 861,843 + ABID97_RS04185 0.73 -1.1 861,844 - ABID97_RS04185 0.73 +0.1 861,993 + ABID97_RS04185 0.86 +0.8 862,463 + ABID97_RS04190 0.27 -0.1 862,463 + ABID97_RS04190 0.27 -0.2 862,463 + ABID97_RS04190 0.27 +0.0 862,463 + ABID97_RS04190 0.27 -0.1 862,463 + ABID97_RS04190 0.27 +0.2 862,463 + ABID97_RS04190 0.27 -0.4 862,463 + ABID97_RS04190 0.27 +0.4 862,463 + ABID97_RS04190 0.27 +1.3 862,464 - ABID97_RS04190 0.27 +1.6 862,464 - ABID97_RS04190 0.27 +0.6 862,464 - ABID97_RS04190 0.27 +0.3 862,464 - ABID97_RS04190 0.27 +0.0 862,464 - ABID97_RS04190 0.27 +1.5 862,464 - ABID97_RS04190 0.27 -1.4 862,464 - ABID97_RS04190 0.27 -0.0 862,464 - ABID97_RS04190 0.27 -0.0 862,496 + ABID97_RS04190 0.30 -0.8 862,497 - ABID97_RS04190 0.31 +1.7 862,580 + ABID97_RS04190 0.38 +3.3 862,709 + ABID97_RS04190 0.50 -0.6 862,710 - ABID97_RS04190 0.50 +0.8 862,949 + ABID97_RS04190 0.72 -0.0 862,949 + ABID97_RS04190 0.72 -0.1 862,949 + ABID97_RS04190 0.72 +0.2 862,949 + ABID97_RS04190 0.72 -0.4 862,950 - ABID97_RS04190 0.72 +0.7 862,950 - ABID97_RS04190 0.72 -1.6 863,003 + ABID97_RS04190 0.77 +1.4 863,028 - ABID97_RS04190 0.79 +0.2 863,028 - ABID97_RS04190 0.79 -0.3
Or see this region's nucleotide sequence